Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19j03
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...   194   1e-50
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    29   0.48 
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   1.9  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   4.5  
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    26   4.5  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   5.9  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   7.8  

>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score =  194 bits (472), Expect = 1e-50
 Identities = 81/145 (55%), Positives = 110/145 (75%)
 Frame = +2

Query: 152 GKAEKGTPKYIANKIKAKGLQKLRWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFADNA 331
           G+AE GTPK I+N +K+KGLQ+LRWYC  CQKQ RDENGFKCHT SE H RQ+ + A N 
Sbjct: 2   GRAEAGTPKAISNALKSKGLQRLRWYCSACQKQMRDENGFKCHTQSEGHIRQMNVIAMNP 61

Query: 332 SKYIDQFSKEFSDGYVELLSRQFGTKRVNANKVYQEYISNRDHLHMNATQWETLTDFVKW 511
            K I  FS +F   ++ LL    G K+++ N+ YQEYI +++H+HMNAT+W TL++F K+
Sbjct: 62  GKRIQDFSNQFLRDFISLLRTAHGEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCKF 121

Query: 512 LGREGKCVVDETEKGWFVTYIDRDP 586
           LGR+G C V+E EKG+F++YID++P
Sbjct: 122 LGRQGMCRVEENEKGFFISYIDKNP 146


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 556 SLLGFIDNTLPFTTEPFHKVG*CLPLRCVHVE 461
           SLL +IDN +   T P+  VG C    C HVE
Sbjct: 439 SLLSYIDNPVSGITCPWLYVGMCFSTFCWHVE 470


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 230 CQMCQKQCRDENGFKCHTMSESHQRQLLLFADNA 331
           C++C K+   E  +  H  S+ H+  L  F  N+
Sbjct: 72  CEVCNKKFYSEGAYSSHMASKKHRDNLSKFQRNS 105


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 161 EKGTPKYIANKIKAK--GLQKLR-WYCQMCQKQCRDENGFKCHTMSESHQR 304
           E G P + ++  +A+  G      +YC++CQK       F+ H  S++H +
Sbjct: 219 EAGLPGWYSHNAEAEKDGKDSTEAFYCEVCQKFFGKITVFEAHKKSKAHNK 269


>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 230 CQMCQKQCRDENGFKCHTMSESHQRQL 310
           C++C     +EN +  HT  + HQ  L
Sbjct: 56  CRLCLTTHANENSYLTHTQGKKHQTNL 82


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 564 TNHPFSVSSTTHFPSRPSHFTKSVSVS 484
           ++ P +VSSTT  PS  S  + SVS S
Sbjct: 138 SSSPSAVSSTTSIPSISSTISSSVSTS 164


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 229 VPAQLLEAFSLYFVRDVFRSTFLRFPAHV-SFRFSVFLRARYNTTNINGVRLFHL 68
           +P      F  Y   +V  ++ L   + + +F+F +F + +YN T     + FHL
Sbjct: 122 LPQNNFRYFQFYGTTNVISASNLTTTSEIPTFKFPIFSKRKYNDTENLYEQPFHL 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,972
Number of Sequences: 5004
Number of extensions: 52024
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)