Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19j01
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...   268   6e-73
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    30   0.31 
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    28   1.6  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    27   2.9  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     26   5.0  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   8.7  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  268 bits (657), Expect = 6e-73
 Identities = 134/221 (60%), Positives = 159/221 (71%), Gaps = 3/221 (1%)
 Frame = +1

Query: 97  AYQKLQEYYNVNSTKINMLQLFQQDRERFEKFSLCIP--TPNDGDILLDYSKNRINSDVF 270
           A+Q +Q +Y      + + +LF +D  RFEKFS         DG IL D+SKN I  +  
Sbjct: 11  AWQAVQTHYESVGKHLVLKELFAKDSSRFEKFSFTFNGLKEEDGPILFDFSKNLITEETV 70

Query: 271 KLLLDLAKSRNVEQARDAMFAGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAV 450
           +LL+ LAK  NVE  RDA+FAG+ INFTEDRAV H ALRN   KP+ VNG+DV   V  V
Sbjct: 71  ELLVKLAKEANVEGLRDALFAGEHINFTEDRAVFHPALRNVSEKPMKVNGQDVMPGVRKV 130

Query: 451 LEHMKEFSDQVVSGQWKGYTGKAITDVINIGIGGSDVGPLMVTEALKPYA-NHLKVHFVS 627
           L HMKEFSD V SG WKGYTGK I  ++N+GIGGSD+GP+MVTEALKPY   +L++HFVS
Sbjct: 131 LRHMKEFSDAVRSGAWKGYTGKPIKSIVNVGIGGSDLGPVMVTEALKPYGQENLELHFVS 190

Query: 628 NIDGTHLAEVLKKLNPETALFIIASKTFTTQETITNASSAK 750
           NIDGTHLAE LKK +PET LF+IASKTFTT ET TNA SAK
Sbjct: 191 NIDGTHLAEALKKCDPETTLFLIASKTFTTAETCTNAKSAK 231


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +1

Query: 1   DSLSIGLRHSICKAPVQSIVTMEPKINLKQDAAYQKLQEYY 123
           +SLSI L  S  +   +SI+++E K+N  + +  +KLQ+ Y
Sbjct: 244 ESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEY 284


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 382 LRNRQN--KPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVIN 537
           + NR N  KP+ +  KD   +     EH K+  D  +SG      G  +++ IN
Sbjct: 668 ITNRLNAKKPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLSEGIN 721


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 4   SLSIGLRHSICKAPVQSIVTMEPKINLKQDAAYQKLQEYY 123
           S    L+ ++C AP  SI   E +IN        K +EY+
Sbjct: 316 SFKESLQQALCSAPTSSIAYHEEEINPDNTIYRAKWEEYF 355


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 746 AELALVIVSCVVKVLDAMMNSAVSGFSFFKTSARWVPSMLDTKWTLR 606
           +ELA++IV+C+ +     +    S F+ F ++    PS  +TK T++
Sbjct: 191 SELAILIVNCLWEAFSPQVMEVWSKFTRFSSTVE--PSRAETKRTVQ 235


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 352 TEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFS 474
           T     LH+A R  Q KP   N     + V + ++  K FS
Sbjct: 173 TNSNIKLHLAARKYQTKPEKFNENSSISQVTSAIKATKAFS 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,601
Number of Sequences: 5004
Number of extensions: 62492
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)