Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19i22
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    44   2e-05
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   8.4  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
 Frame = +1

Query: 415 IFIHIIPQGTPYILIPFXXXXXXXXXXXRPGTLAVRLTANIIAGHLLITLL-----RRTG 579
           +F   +P GTP  LIP            R  +L +RL ANIIAGHL +++L        G
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMG 208

Query: 580 TN-ISFYXXXXXXXXXXXXXXXESAVAIIQSYVITIL 687
            N I+F                E  +A IQ+YV  IL
Sbjct: 209 LNLITFIIGFLPITVLVAISLLEFGIAFIQAYVFAIL 245


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 251 VDPLK*LFFNNV-LNSLRNFFEMKFHIXKCRFGINQNLYGIN 129
           +  L+ LF NN  L + + +FE  FH+     G+  N+  IN
Sbjct: 92  IKSLQCLFCNNEGLLNRQEWFEHSFHVHGLNIGLADNIVYIN 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,637
Number of Sequences: 5004
Number of extensions: 23785
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)