Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19i19
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    27   2.1  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   2.1  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    27   2.8  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.7  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    26   4.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   4.9  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.9  

>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +1

Query: 4   TETIDEADRTYFVSFLILYLFLSTEKADLNDAKTCNLLA--------KGILELYEPPLTT 159
           T T+       + SFL+LY+  + +K  L+ A + N+L         +  L+ Y   + T
Sbjct: 146 TTTLTSFHEEAYYSFLLLYIITTGKKFQLDSATSSNVLPLKRHMVPYEEFLDAYLKDVNT 205

Query: 160 INTHLKE 180
           + T +KE
Sbjct: 206 LRTVIKE 212


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = -1

Query: 355 TIALFYVVPSLNSIWLIVFLCLLQYRLTLHPALHHSVYLLAFASQILLCCV*HLAFPLIP 176
           ++++  + PSL+SI   + L L      +H  L     L  +AS I      +L+F L  
Sbjct: 703 SMSVLPISPSLHSILRFLLLLLAFLCFAMHILLTPEATLRKWASSI------YLSFRL-- 754

Query: 175 SNECLLLSMVVRTTPKYLW 119
             EC+ +S ++ + P Y W
Sbjct: 755 --ECVFISFLIFSVPIYDW 771


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 127 YLWPVSYKS-SRHSNLLSRYLKINKVLKTIRSTYDQ 23
           Y W + Y S S  S +  RY K++  LK+I   +DQ
Sbjct: 638 YDWLIEYGSQSPTSEVTDRYKKLDDTLKSISFRFDQ 673


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 124 LWPVSYKSSRHSNLLSRYLKINKVLKT 44
           +W   Y SSRH+ LL   +  N V  T
Sbjct: 367 MWDFVYSSSRHNTLLDEDINCNTVYAT 393


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 190 KQDAIHNTIKFERQKLEDIQN 252
           K+DA+++TI+ E QK  +IQN
Sbjct: 66  KEDALYSTIREEYQKAINIQN 86


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 7   ETIDEADRTYFVSFLILYLFLSTEKADLNDAK-TCNLLAKGILELYEPPLTTINTH 171
           + +  AD  Y  S  ++YL    E  +L++ K   N + K IL+ Y+  ++  NT+
Sbjct: 580 QLVFSADDEYLASVYLIYL-KQMETKNLSEEKPQVNKIVKKILKKYDSSVSVWNTY 634


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 555 AHSPPGVKWLLEPIDIYNVNAPPTSRYKDISYNIIMPLAGAL-FIRRHLIRFGANS 719
           A  PP +K    P+DI N++A    +  D+    I+ L  A     R +I  G +S
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLKKIDLLLEEILQLDSAYDAAERRMIESGWSS 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,351
Number of Sequences: 5004
Number of extensions: 61656
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)