Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19i18
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 114 1e-26
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 87 3e-18
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 71 1e-13
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 69 7e-13
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 68 1e-12
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 66 6e-12
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 65 1e-11
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 63 4e-11
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 61 2e-10
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 60 2e-10
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 60 4e-10
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 54 3e-08
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 52 8e-08
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 51 2e-07
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 51 2e-07
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 50 3e-07
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 50 4e-07
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 48 1e-06
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 45 9e-06
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 45 9e-06
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 40 5e-04
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 26 4.5
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 26 4.5
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar... 26 6.0
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce... 25 7.9
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 7.9
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 114 bits (275), Expect = 1e-26
Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 9/180 (5%)
Frame = +3
Query: 144 IEGNKDEAEKCIEIAQLAFTAGNVEKAERFLLKAERLYPTTRAKELLTRVRXXXXXXXXX 323
+E +++EA +CI +A+ AG +KA +F K+ R++ TT ++ + ++
Sbjct: 1 MESSREEALRCIGLARKYLNAGEYDKALKFANKSLRIHATTEGEDFVKQIEKQKLTGSPN 60
Query: 324 XXXXXXXDN--------DDLRKRKTPTHQPQHREYTTEQLEAVRRI-KTKCKDYYEILGV 476
+N +R+ + + +++T+EQ V++I K K YYEIL +
Sbjct: 61 PQATPKQENKSNFFSEKQSVRENGNSSAGEKKQKWTSEQHLLVQKIIKYKNHQYYEILDL 120
Query: 477 TKEATDSDIKKAYKKLALQLHPDKNRAPGAAEAFKAIGNAAAILTDPEKRKQYDIRGDEP 656
K TD++IKK+YKKLALQLHPDKN AP A EAFK + A +L+DP R YD G +P
Sbjct: 121 KKTCTDTEIKKSYKKLALQLHPDKNHAPSADEAFKMVSKAFQVLSDPNLRAHYDRTGMDP 180
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 86.6 bits (205), Expect = 3e-18
Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +3
Query: 438 KTKCKDYYEILGVTKEATDSDIKKAYKKLALQLHPDKNRAPGAAEA-FKAIGNAAAILTD 614
K+K KD+Y+ILGV+KEATD +IKKAY+KLAL HPDKN AEA FK +G A IL+D
Sbjct: 344 KSKRKDHYKILGVSKEATDIEIKKAYRKLALVYHPDKNAGNLEAEARFKEVGEAYTILSD 403
Query: 615 PEKRKQYD 638
PE R+++D
Sbjct: 404 PESRRRFD 411
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 71.3 bits (167), Expect = 1e-13
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +3
Query: 453 DYYEILGVTKEATDSDIKKAYKKLALQLHPDKN--RAPGAAEAFKAIGNAAAILTDPEKR 626
+YY++LG++ +AT DIKKAY+KLA++ HPDKN GA+E F+ I A +L D + R
Sbjct: 8 EYYDLLGISTDATAVDIKKAYRKLAVKYHPDKNPDDPQGASEKFQKISEAYQVLGDEKLR 67
Query: 627 KQYDIRGDEPA 659
QYD G E A
Sbjct: 68 SQYDQFGKEKA 78
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 68.9 bits (161), Expect = 7e-13
Identities = 34/65 (52%), Positives = 43/65 (66%)
Frame = +3
Query: 459 YEILGVTKEATDSDIKKAYKKLALQLHPDKNRAPGAAEAFKAIGNAAAILTDPEKRKQYD 638
YE+L V A+ +++KKAY+KLAL+ HPDKN P A + FK I A IL D EKR YD
Sbjct: 8 YEVLNVDVTASQAELKKAYRKLALKYHPDKN--PNAGDKFKEISRAYEILADEEKRATYD 65
Query: 639 IRGDE 653
G+E
Sbjct: 66 RFGEE 70
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 68.1 bits (159), Expect = 1e-12
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 3/67 (4%)
Frame = +3
Query: 462 EILGVTKEATDSDIKKAYKKLALQLHPDKNRAPG---AAEAFKAIGNAAAILTDPEKRKQ 632
+ILGV+K+A++S+I+KAY++L Q HPDKN PG A E F I A +L+DPE+RK
Sbjct: 10 QILGVSKDASESEIRKAYRQLTKQWHPDKN--PGNEEAQEKFIEINKAHEVLSDPEQRKI 67
Query: 633 YDIRGDE 653
YD G+E
Sbjct: 68 YDAYGEE 74
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 65.7 bits (153), Expect = 6e-12
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +3
Query: 459 YEILGVTKEATDSDIKKAYKKLALQLHPDKNRAPGAAEAFKAIGNAAAILTDPEKRKQYD 638
Y+ L V EA+++++KKAY+KLAL+ HPDKN P + FK I A +L+DP++RK YD
Sbjct: 8 YDCLEVRPEASEAELKKAYRKLALKYHPDKN--PNGEKKFKEISLAYEVLSDPQRRKLYD 65
Query: 639 IRG 647
G
Sbjct: 66 QYG 68
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Frame = +3
Query: 450 KDYYEILGVTKEATDSDIKKAYKKLALQLHPDKNRA-PGAA-EAFKAIGNAAAILTDPEK 623
+DYY+IL ++ +A IKK+Y++LA+ HPDKNR P AA E F+ + A +L+DP+
Sbjct: 8 RDYYDILNISVDADGDTIKKSYRRLAILYHPDKNRENPEAAREKFQKLAEAYQVLSDPKL 67
Query: 624 RKQYDIRG 647
R++YD G
Sbjct: 68 REKYDKLG 75
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 62.9 bits (146), Expect = 4e-11
Identities = 31/65 (47%), Positives = 40/65 (61%)
Frame = +3
Query: 453 DYYEILGVTKEATDSDIKKAYKKLALQLHPDKNRAPGAAEAFKAIGNAAAILTDPEKRKQ 632
D Y+ LGV+K A+ S+IK AY KLA Q HPD N A + F I A +L DP+K+K
Sbjct: 86 DPYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVEIKQAYEVLQDPKKKKA 145
Query: 633 YDIRG 647
+D G
Sbjct: 146 FDTYG 150
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +3
Query: 453 DYYEILGVTKEATDSDIKKAYKKLALQLHPDKN-RAPGAAEAFKAIGNAAAILTDPEKRK 629
DYYE+LG+ ++A D +I +A++K +L+ HPDKN P AAE F + A L D + RK
Sbjct: 9 DYYELLGINEDAQDQEIHRAWRKTSLKYHPDKNPNDPKAAEKFHMLQLAYNALIDVQLRK 68
Query: 630 QYD 638
YD
Sbjct: 69 AYD 71
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 60.5 bits (140), Expect = 2e-10
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +3
Query: 450 KDYYEILGVTKEATDSDIKKAYKKLALQLHPDK---NRAPGAAEAFKAIGNAAAILTDPE 620
KDYY IL +T +A+ +IK AYKK AL+ HPD+ + A E F+ + A +L+D
Sbjct: 3 KDYYAILNITPKASAEEIKYAYKKAALETHPDRVSPSARARATEQFQLVNEAYYVLSDNS 62
Query: 621 KRKQYDIRGDEPAPATHTHQYYAR 692
+R QYD R + A +++R
Sbjct: 63 RRAQYD-RESASSSAKPRQSFFSR 85
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 59.7 bits (138), Expect = 4e-10
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Frame = +3
Query: 459 YEILGVTKEATDSDIKKAYKKLALQLHPDK---NRAPGAAEAFKAIGNAAAILTDPEKRK 629
Y+IL V EA+ +IKK+YK+LAL HPDK + AAE F+ + A IL DPE R+
Sbjct: 8 YDILEVHFEASAEEIKKSYKRLALLHHPDKAPIHEKEEAAERFRGVQEAYDILKDPESRE 67
Query: 630 QYDIRG 647
YD+ G
Sbjct: 68 MYDMYG 73
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 53.6 bits (123), Expect = 3e-08
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Frame = +3
Query: 453 DYYEILGVTKEATDSDIKKAYKKLALQLHPDK----NRAPGAAEAFKAIGNAAAILTDPE 620
D Y +LGV K+A+D I++AY+K ALQ HPD+ + A F + A +L+D +
Sbjct: 31 DPYSVLGVEKDASDELIRRAYRKKALQHHPDRIHDEEKKVEARIEFDKVAIAYGVLSDKK 90
Query: 621 KRKQYDIRG 647
+RK YD G
Sbjct: 91 RRKHYDKTG 99
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 52.0 bits (119), Expect = 8e-08
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Frame = +3
Query: 444 KCKDYYEILGVTK---EATDSDIKKAYKKLALQLHPDKNRAPGAA---EAFKAIGNAAAI 605
K +D+Y +LG++K +A IKKA+ K L+ HPDK A G FK I A I
Sbjct: 94 KQQDHYAVLGLSKYRYKADTEQIKKAHLKKVLKHHPDKKAASGNINDDSFFKCIQKAYEI 153
Query: 606 LTDPEKRKQYD 638
L+DP +R+Q+D
Sbjct: 154 LSDPVRRRQFD 164
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +3
Query: 432 RIKTKCKDYYEILGVTKEATDSDIKKAYKKLALQLHPDKNR------APGAAEAFKAIGN 593
R+K D YEILG+ K + D+++ YK+L+++ HPDK R + + I N
Sbjct: 91 RLKLNIWDPYEILGIAKGTSVDDVRRHYKRLSIKFHPDKVRNMVNTTREEVEKHYIEITN 150
Query: 594 AAAILTDPEKRKQYDIRGDEPAP 662
A LTD + R+ Y + G P
Sbjct: 151 AYRALTDDKTRENYALYGTPDVP 173
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/74 (33%), Positives = 44/74 (59%)
Frame = +3
Query: 417 LEAVRRIKTKCKDYYEILGVTKEATDSDIKKAYKKLALQLHPDKNRAPGAAEAFKAIGNA 596
+++++ I +YE+L V +A+ +I +AY+K ++ HPDKN P + E + +G
Sbjct: 28 VDSLKSILKNKATFYELLEVPTKASIKEINRAYRKKSILYHPDKN--PKSKELYTLLGLI 85
Query: 597 AAILTDPEKRKQYD 638
IL + E RK+YD
Sbjct: 86 VNILRNTETRKRYD 99
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 50.0 bits (114), Expect = 3e-07
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Frame = +3
Query: 453 DYYEILGVTKEATDSDIKKAYKKLALQLHPDKNRAPG----AAEAFKAIGNAAAILTDPE 620
DYY IL + K AT I+K Y LALQ HPD+N PG A + F+ + A +L+D
Sbjct: 12 DYYAILKLQKNATFQQIRKQYLFLALQYHPDRN--PGDEERAVKRFQRLQLAHEVLSDAT 69
Query: 621 KRKQYD 638
KR YD
Sbjct: 70 KRLIYD 75
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 49.6 bits (113), Expect = 4e-07
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +3
Query: 444 KCKDYYEILGVTKEATDSDIKKAYKKLALQLHPDKNRAPGAA---EAFKAIGNAAAILTD 614
K D YEIL V ++ +IK Y+KLALQ HPD+N PG E F I A IL++
Sbjct: 6 KDMDCYEILQVNHDSDLQEIKANYRKLALQYHPDRN--PGIEDYNEIFSQINAAYNILSN 63
Query: 615 PEKRKQYD 638
+KRK ++
Sbjct: 64 DDKRKWHE 71
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 453 DYYEILGVTKEATDSDIKKAYKKLALQLHPDKN--RAPGAAEAFKAIGNAAAILTDPEKR 626
DYY ILG ++ +I++ Y KL L+ HPD+N R F+ I A +L DP+ R
Sbjct: 12 DYYTILGAESTSSYVEIRQQYLKLVLRYHPDRNPGREAEVLPQFQLIQKAHEVLKDPKLR 71
Query: 627 KQYDIR 644
+ +D R
Sbjct: 72 ELFDQR 77
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 45.2 bits (102), Expect = 9e-06
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 453 DYYEILGVT--KEATDSDIKKAYKKLALQLHPDK-NRAPGAAEAFKAIGNAAAILTDPEK 623
++Y +L + K TD +IK+AY+K L HPDK P + A +L+ +
Sbjct: 2 NHYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEKD 61
Query: 624 RKQYDIRGDE 653
R+QY I+ +E
Sbjct: 62 RQQYQIKQEE 71
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 45.2 bits (102), Expect = 9e-06
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 459 YEILGVTKEATDSDIKKAYKKLALQLHPDKNR-APGAAEAFKAIGNAAAILTDPEKRKQY 635
Y++L + + DI+ Y+K +L +HPDKNR P AA+AF + A + L + + R+
Sbjct: 33 YDVLDILPGMSVDDIRNLYRKKSLMIHPDKNRDNPKAADAFDILKKAESDLVNDKIRESL 92
Query: 636 D 638
D
Sbjct: 93 D 93
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 39.5 bits (88), Expect = 5e-04
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Frame = +3
Query: 459 YEILGVTKEATDSDIKKAYKKLALQLHPDKNR-----APGAA---------EAFKAIGNA 596
YEIL + + T +DIK+ Y +L + HPDK + AP + E F+ + A
Sbjct: 34 YEILELPRTCTANDIKRKYIELVKKHHPDKMKNASQLAPTESPPEINKHNEEYFRLLLAA 93
Query: 597 AAILTDPEKRKQYD---IRGDEPAPATH 671
A+L+D +R++YD I ++P+ TH
Sbjct: 94 NALLSDKRRREEYDRFGIHWNQPSHPTH 121
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 355 SSLSLDEEVDFEAVPDAGVARTRVKSSLARVVGYRRSAFSRN 230
+S+S +D +A+PD + V S R + RR+ SRN
Sbjct: 27 TSISSTNIIDLDAIPDDSFPSSPVLSPRRRRMNRRRNERSRN 68
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 111 LIQLLKNAKMTIEGNKDEAEKCIEIAQLAFTAGNVEKAERFLLKAERLYPTTRAKEL 281
+IQ ++ K + K +AE C EI+++ + EK +FLL+ R T A+EL
Sbjct: 596 IIQNVEKLKSYLNSFKVQAE-CSEISKILSFSQETEKKYKFLLQTVR-NETEIAREL 650
>SPBC1709.16c |||aromatic ring-opening dioxygenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 6.0
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +3
Query: 402 YTTEQLEAVRRIKTKCKDYYEI-LGVTKEA-TDSDIKKAYKKLALQLHPDKNRAPGAAEA 575
+T E L A T Y E L + K TD + K L LQLHP +A E
Sbjct: 193 HTFEDLSAFNE-DTAADGYKEFQLDILKAIETDKQNDRLNKLLGLQLHPYFRKAHPREEH 251
Query: 576 FKAIGNAAAILTDPEKRKQYDIRG 647
F + AA + + + + D+ G
Sbjct: 252 FVPLYVAAGLGSSGKSKVVCDLYG 275
>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 122
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 432 RIKTKCKDYYEILGVTKEATDSDIKKAYKK---LALQLHPDKNRA 557
+IKT KD IL V E+ ++AYK + L L K RA
Sbjct: 45 KIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRA 89
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 367 ERLLLTSLSIASTPRSSSKRCAGSRPSARITTKSW 471
+ LL IAS PRS S C G+ S+ T S+
Sbjct: 47 DNLLPQDDQIASDPRSESNSCNGNTSSSLPCTDSY 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,193
Number of Sequences: 5004
Number of extensions: 42560
Number of successful extensions: 164
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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