Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19i06
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   0.94 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    27   1.2  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   2.2  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    26   3.8  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   8.8  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   8.8  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 400 PYCMESCQNATHYCPNCNAYIGT 468
           PY + +C N T Y  NCN+ + T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 327 RCFEQDSSFCVNPLFDRMLAMCLHPLLHGKLSKCYSLLSELQRLHWNLYKLMSL 488
           R F++      NP++D  +  CL+P L GKL   + +  E+ R+ W +   +S+
Sbjct: 175 RLFDKPHRLSGNPIYDAFMGACLNPRL-GKLLD-FKMFFEV-RIPWFILFFISV 225


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 402 LLHGKLSKCYSLLSELQRLHWNLY 473
           +L G +S+C S+ S  Q+LH N+Y
Sbjct: 133 VLQGNISQCLSVASTFQKLH-NMY 155


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 418 CQNATHYCPNCNAYIGTYTN**VCDKC 498
           C+     CP C++++   T   +CD+C
Sbjct: 23  CERCDEKCPICDSHVRPTTLVRICDEC 49


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 510 FFLFAFITNSSICIGSNVGVAIRTVMSSILTAFHAVRDA 394
           FFLF  I  S    G  V   +  V   ++    AV+DA
Sbjct: 116 FFLFLVILQSISIFGEQVNPGLAAVPLIVVVGITAVKDA 154


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 107 IKEICLARTMGLLHKIRLL 163
           I+EIC A   GLLH IR L
Sbjct: 336 IEEICNAVRGGLLHNIRYL 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,226
Number of Sequences: 5004
Number of extensions: 34865
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)