Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19i04
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.09 |srp14||signal recognition particle subunit Srp14|S...    36   0.008
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   3.5  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    26   4.6  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   6.1  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    26   6.1  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   8.0  

>SPAC19B12.09 |srp14||signal recognition particle subunit
           Srp14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
 Frame = +3

Query: 108 VLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPMPR-DGTPAVKNPEYKCLLRAQ 284
           +LLSN+EFL +LT L Q  +  G+ ++ + +   +  P+   +G+ A        L+RA+
Sbjct: 1   MLLSNEEFLKKLTDLLQTHQSKGTGSVYLSQ---KCNPVDEGEGSSA------SVLIRAK 51

Query: 285 S-KSKKISTVVEQRDVEKFSTAYSNLLKTSVNG 380
           S  ++KISTVVE      F  +Y+ + K  + G
Sbjct: 52  SGAAEKISTVVELDYFTDFFQSYAEVCKGQIVG 84


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/94 (20%), Positives = 40/94 (42%)
 Frame = -1

Query: 693 IIFNRSTRYIIFCIKSVVHLVNDCIMPY*QKQVRLQLFNLPWREKHSSMDLIPHARISGW 514
           I FN  +   I   + +V+L  + +    +  V  +   + +R  ++   L+P  ++   
Sbjct: 137 INFNNMSTMKIVLERWIVNLDGEALSTPLELAVLYKKLVVLFRSLYTYTHLMPLWKLKSK 196

Query: 513 YHKVTCHFTYLTLSCALHNQSMTQSLLHTTESPL 412
            HK+  H T L + CAL    +  +      +P+
Sbjct: 197 IHKLRAHGTSLKVGCALSTDDVLSNDFLPISAPI 230


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 131 SSRVNKTFPKSTISRINHNDYEEI*RP 211
           SS  NKT  KSTI  I + D+E    P
Sbjct: 309 SSHGNKTSQKSTIKNIENEDHENTKSP 335


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -3

Query: 340 ENFSTSRCSTTVDIFLLLDCARNRHLYSGFLTAGVPSRGIGLLRPSYLFIVIVI---DPA 170
           E FS+    T  +I  L   A NR+     LT+   +R   L  P+Y  +  +I    P+
Sbjct: 159 ELFSSPSSITANEIARLCQEANNRNYLLQSLTSATDARRAFLNNPNYRLLSAIIFQDGPS 218

Query: 169 NRAF 158
           N AF
Sbjct: 219 NLAF 222


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 153 FQKARLAGSITMTMKRYDGRSKPMPRDGTPAVKNPEYKCLLR 278
           FQ   L    T+T    DG +   PRDGTP +  PE+   L+
Sbjct: 102 FQMVSLLKLATITE---DGVTFLSPRDGTPMLLTPEHSISLQ 140


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 637 MYNTFYTKDNISCASIKYNIQN 702
           MYN   TKDNIS  ++  N +N
Sbjct: 466 MYNRVMTKDNISVITLLENKEN 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,593
Number of Sequences: 5004
Number of extensions: 47490
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)