Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19i04
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/35 (20%), Positives = 19/35 (54%)
 Frame = +1

Query: 247 LKIPNTNAYYGHNLKVKRYQQLWNSVMLKSSQLHI 351
           +++PN   +Y  +L +  +  +  S++    +LH+
Sbjct: 301 IQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHV 335


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 398 LFQAFQAINTRFQQIRI 348
           LF  F  ++ RF+Q+RI
Sbjct: 301 LFARFDQLSERFEQLRI 317



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 525 ISGWYHKVTCHFTYLTLSCALHNQSMTQSLLHTTESPLL 409
           + G  H +T HF    +  A HN     S L     PL+
Sbjct: 507 LKGHAHWLTLHFKDPKVESAFHNAEEAFSPLSLLGGPLV 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,389
Number of Sequences: 438
Number of extensions: 3476
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)