Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19i01
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...   216   2e-57
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.5  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   4.4  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   5.9  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    26   5.9  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.8  

>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score =  216 bits (528), Expect = 2e-57
 Identities = 104/189 (55%), Positives = 132/189 (69%), Gaps = 6/189 (3%)
 Frame = +2

Query: 128 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 307
           MD+QNR G + GGGGVA + E+N  RRERLR+LALETIDL+KDPY MKNHLG++EC+LCL
Sbjct: 1   MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHLGTFECRLCL 60

Query: 308 TLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXP-----EKPRIEPKK-FVKIGR 469
           T H NE SYL HTQGKKHQ                          +  ++ KK  VKIGR
Sbjct: 61  TTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSHVQVKKSVVKIGR 120

Query: 470 PGYRVTKQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAE 649
           PGY+V+K ++ E+G+  L FQ+ YP+I     PR+R MSAYEQ++E PDR++QYL+ AAE
Sbjct: 121 PGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAAE 180

Query: 650 PYETIAFKV 676
           PYE+IAFK+
Sbjct: 181 PYESIAFKI 189


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +2

Query: 485 TKQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETI 664
           T   DP    + ++  +D P+ A G        SA    I PP R W    F ++ +E I
Sbjct: 646 TSLLDPARAVRKVIDGIDPPKEA-GAGATADVESAANSPITPP-RTWHSPDFTSKSFEPI 703

Query: 665 AFKVPSR 685
             K+PSR
Sbjct: 704 ERKLPSR 710


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 293 CKLCLTLHNNEGSYLAHTQGKKHQ 364
           C++C     +EG+Y +H   KKH+
Sbjct: 72  CEVCNKKFYSEGAYSSHMASKKHR 95


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 NRPGGKTGGGGVASWSESNRDRRERLRQLA 229
           NR G   GGG    + +SNR  R R +Q A
Sbjct: 455 NRGGHPRGGGNRGGYRQSNRQPRYRGQQKA 484


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 558 VLYLDIDLCLLMNRRLSLQTADGSICYLQQSLMK 659
           + +LD D  L+MN+ LSLQ    S   LQ+SL++
Sbjct: 156 IWWLDQD-ALIMNKNLSLQELFLSPAMLQKSLLR 188


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 185 SESNRDRRERLRQLALETIDLNKDPYFMKN 274
           + SN+D R R+     + IDLN  P  +KN
Sbjct: 438 ASSNQDYRVRVLSRNFKCIDLNNVPEIIKN 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,809
Number of Sequences: 5004
Number of extensions: 48676
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)