Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19h24
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   7.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   7.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 380 EFVPTLLAIVLTGATYTPYDLKVGKASLKHKLSVVKPKYFIYSNKFWLTYS 532
           E +P+L +  +T +T  PY        +   ++   P Y  Y  K +L Y+
Sbjct: 619 ETIPSLNSTNVTLSTKCPYPSYYSYIGVLTLVATSMPTYICYLGKAYLMYA 669


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 248 LLQFGHSTVGYAPT*IAQNLNVPVLERFYHQTQNYNY 138
           LL  G+ +V        Q    P+LERF+ +T +Y Y
Sbjct: 11  LLYLGNESVHGIQKWGTQFGQAPLLERFFWRTLDYAY 47


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 677 YLFVLEPASVQTDPHRHIWMLSFLWKPHPRCCLPE 573
           Y  V++P  +     R   MLSF W     C LP+
Sbjct: 137 YYAVIKPLQLWDVDKRGKIMLSFAWIGSVVCSLPQ 171


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +2

Query: 122 YIKMPYNYNFVFGDKNVQVPAHLNFGQFMLEHIRQW 229
           Y K  Y  N++   + + VP  + +G F    +  W
Sbjct: 111 YNKKLYYKNYIINIEQIPVPVPVYYGNFPPRPMGPW 146


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +2

Query: 122 YIKMPYNYNFVFGDKNVQVPAHLNFGQFMLEHIRQW 229
           Y K  Y  N++   + + VP  + +G F    +  W
Sbjct: 336 YNKKLYYKNYIINIEQIPVPVPVYYGNFPPRPMGPW 371


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 443 KVGKASLKHKLSVVKPKYFI 502
           K+ + +LKH + V   ++FI
Sbjct: 399 KIDETTLKHLIDVASDRFFI 418


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 656 PVQGQIDTAAVLYSSGTTGMP 718
           P+ G +  AAV Y+SG   +P
Sbjct: 104 PLTGDLSPAAVSYTSGFYHIP 124


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 53  CFKLFLIGKKLPVF 94
           CF L    KKLPVF
Sbjct: 545 CFSLKFKNKKLPVF 558


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 443 KVGKASLKHKLSVVKPKYFI 502
           K+ + +LKH + V   ++FI
Sbjct: 399 KIDETTLKHLIDVASDRFFI 418


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 191 NFGQFMLEHIRQWNDQIAIENADTGEKLSYKEIAQYVVNLSASLT 325
           +FG    + I +WN    +  A+  +   +  +A    N SAS T
Sbjct: 150 SFGYTKRDVIYKWNSARQVAIAEDMKLSQFDLVANPTANYSASTT 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,416
Number of Sequences: 438
Number of extensions: 5594
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)