Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19h08
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    27   0.13 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    27   0.13 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 217 DLLMGGVSAMFATMFTNPIEVVKTRLQLQ 303
           D L GGV+A  +     PIE VK  LQ+Q
Sbjct: 13  DFLAGGVAAAISKTTVAPIERVKLLLQVQ 41



 Score = 25.4 bits (53), Expect = 0.52
 Identities = 35/161 (21%), Positives = 57/161 (35%)
 Frame = +1

Query: 211 VTDLLMGGVSAMFATMFTNPIEVVKTRLQLQGEMKARGHHAVFYKNVPHGLFVIARTEGM 390
           V +L  GG +   +  F  P++  +TRL      KA G     +  + + L  I + +G+
Sbjct: 116 VGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGERE--FTGLGNCLTKIFKADGI 172

Query: 391 AALQSGLPAMLGFQFFLNTFRLGVYRISERRGLTTDKSGRTSXXXXXXXXXXXXXXXXXX 570
             L  G    +           G Y     RG+  D   +T                   
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFY--DTARGMLPDPK-KTPFLISWGIAQVVTTVAGIV 229

Query: 571 XTPFFLVKTRLQAQAARAIAVGHQHQHAGTAGALADIYRRE 693
             PF  V+ R+  Q+ RA +   +  +  T    A IY+ E
Sbjct: 230 SYPFDTVRRRMMMQSGRAKS---EILYKSTLHCWATIYKTE 267


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 217 DLLMGGVSAMFATMFTNPIEVVKTRLQLQ 303
           D L GGV+A  +     PIE VK  LQ+Q
Sbjct: 13  DFLAGGVAAAISKTTVAPIERVKLLLQVQ 41



 Score = 25.4 bits (53), Expect = 0.52
 Identities = 35/161 (21%), Positives = 57/161 (35%)
 Frame = +1

Query: 211 VTDLLMGGVSAMFATMFTNPIEVVKTRLQLQGEMKARGHHAVFYKNVPHGLFVIARTEGM 390
           V +L  GG +   +  F  P++  +TRL      KA G     +  + + L  I + +G+
Sbjct: 116 VGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGERE--FTGLGNCLTKIFKADGI 172

Query: 391 AALQSGLPAMLGFQFFLNTFRLGVYRISERRGLTTDKSGRTSXXXXXXXXXXXXXXXXXX 570
             L  G    +           G Y     RG+  D   +T                   
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFY--DTARGMLPDPK-KTPFLISWGIAQVVTTVAGIV 229

Query: 571 XTPFFLVKTRLQAQAARAIAVGHQHQHAGTAGALADIYRRE 693
             PF  V+ R+  Q+ RA +   +  +  T    A IY+ E
Sbjct: 230 SYPFDTVRRRMMMQSGRAKS---EILYKSTLHCWATIYKTE 267


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 456  GRLPYQRTTWANHGQVGAH 512
            GRL  + +TW  H  V  H
Sbjct: 1668 GRLDTEMSTWGYHHNVNKH 1686


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 424 QA*PVIHFVEQP 389
           QA PVIHF++ P
Sbjct: 30  QATPVIHFLQYP 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,383
Number of Sequences: 438
Number of extensions: 4081
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)