Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19h07
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    29   0.58 
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     28   1.0  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.2  
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.2  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   7.2  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    25   7.2  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    25   9.5  

>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 247 RYGEGIEDYGNFILHYKGETPGLYGV 324
           R+G  +  Y NF+L  KGE   L GV
Sbjct: 545 RFGNSVAKYANFLLSLKGENVKLKGV 570


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 23/107 (21%), Positives = 41/107 (38%)
 Frame = +1

Query: 313 LYGVGFLVKKGLAEKIGEIKGVSERIAVLNIELPVKNAEKWSIIQAYSPTESNKKDDIRK 492
           + G G    K L     ++ G  +  A   +   ++N   + +     PTES +   +  
Sbjct: 49  IVGDGLRPDKLLQPHSEKVIGEEQTYAAPFLRSIIQNNGTFGVSHTRVPTES-RPGHVAL 107

Query: 493 IEKFYEDLHLTIENSHKNIIVMGDFNGQIGKRNNFGEEYTIGLYGSG 633
           I  FYED+    +   KN +       Q     +FG E  + ++  G
Sbjct: 108 IAGFYEDVSAVTKGWKKNPVNFDSVFNQSRHTYSFGSEDILPMFSEG 154


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 137 CISKNLFFSIRGCWSFSPTKTNR 69
           C+S NL+ S+R  W F P    R
Sbjct: 136 CVSTNLYDSVRLNWYFRPRDIQR 158


>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 93  ILPHEDQSAWER*NIIAVKWWSFTEKIFEI 4
           I P ED S W R    AVKW   TE+  EI
Sbjct: 26  ITPAED-SRWARGFTYAVKWKQPTEQFVEI 54


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +1

Query: 436 SIIQAYSPTESNKKDDIRKIEKFYEDLHLTIENSHKNIIVMGDFNGQIGKRNNFGE--EY 609
           S+   YS    N +   RKI +F E L+   EN+   +I  G     + + +  G    Y
Sbjct: 628 SLTNWYSTLLKNTQIRFRKILRFSETLNSRFENASDFVISEGHLPDLVNRLSTTGHFLAY 687

Query: 610 TIGLYGSG 633
           T  L   G
Sbjct: 688 TANLERDG 695


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +1

Query: 175 EKLQELELALSDIKWDIIGISEMRRYGEGIEDYGNFILHYKGETPGLYGVGFLVKKGLAE 354
           ++LQ   + + ++K       +     EG + Y  F    KG +    GVGF VKK +A 
Sbjct: 31  QELQADVICVQELKMQKDSFPQQYAVVEGFDSYFTFPKIRKGYS----GVGFYVKKDVAI 86

Query: 355 KIGEIKGVS 381
            +   +G++
Sbjct: 87  PVKAEEGIT 95


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/77 (23%), Positives = 36/77 (46%)
 Frame = +1

Query: 301 ETPGLYGVGFLVKKGLAEKIGEIKGVSERIAVLNIELPVKNAEKWSIIQAYSPTESNKKD 480
           +TP  YG   +   G+A K   I    +   + ++E  +    +W     + PT  + + 
Sbjct: 244 KTPPSYGSTIVNIGGIAMKDKIISATVDN-TIEHVETTLDPDTEW-----HEPTRISYEW 297

Query: 481 DIRKIEKFYEDLHLTIE 531
           D +  E + ED+HL+++
Sbjct: 298 DGKDAETYTEDIHLSVD 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,452
Number of Sequences: 5004
Number of extensions: 52560
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)