Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19h03
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    30   0.37 
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   3.4  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    26   6.0  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   7.9  

>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +2

Query: 323 EKRGSVRGDVVESRKVEGYGKVYRFTGVVNCPARFLYEEFKNNLTKLPEWNPTILKCEII 502
           ++R S R D+V S K   Y   YR   +VN   +  Y E K +  +   +N  I +  + 
Sbjct: 477 QRRTSGRHDLVHSSKKVSYETKYRIERLVNAALKPYYREAKISKDQFALFNKNICR-SVY 535

Query: 503 KEIGDG 520
             + DG
Sbjct: 536 TALSDG 541


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = -2

Query: 684 PGT*TLTPLLMYPWGLSSTTRPSRESSAIRRRITKSRGVIMP---RPPPAVTWYDRSTPS 514
           PG   LT +  +PW  S     S+ +S  R+   K  G   P    P     W    + +
Sbjct: 125 PGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLT 184

Query: 513 PI-SLIISHF 487
           P+ S  IS F
Sbjct: 185 PLTSEAISQF 194


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 114 CNIFLHYLLQHTELHIAFGIDFFLTRTQPPYPVNG 10
           C ++ ++ +  TE  +   I+ FL    P  PVNG
Sbjct: 299 CGVYTNFTVAKTEECVLASIETFLDTGIPTNPVNG 333


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 586 HEVARGYYASSPASRHLVRQV-HAI 515
           H++ R  Y S   SRH++ QV HAI
Sbjct: 220 HQIVRLTYFSEDLSRHVITQVAHAI 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,941
Number of Sequences: 5004
Number of extensions: 51832
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)