Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19h02
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.7
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 28 1.7
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.9
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 5.1
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 6.7
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 6.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.9
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 25 8.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.9
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 27.9 bits (59), Expect = 1.7
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Frame = +3
Query: 105 MELERALEAGVSVIVIEPEPLG---EETARWIYVGNLLHKVSVYSGLCGIASGLMWNSLA 275
M+L+ G+S + LG E +WI+V L K+ +YS L I +++A
Sbjct: 1 MQLQSPFGDGISCECLNIRVLGIPNETKHQWIFVPRDLIKIKIYS-LLQICKAENCSAVA 59
Query: 276 CTPFGIVSILCSGCYTLSWQWDPCCKYQEEKNRRHIATLPM-LSDLTSASPV 428
C + + G +S +P +QEE + +I + LS + ++ P+
Sbjct: 60 CRGCNLCILAVQGNIEIS--EEPQKLFQEENVKVYIYDSAISLSSVRASFPI 109
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 399 TLAVSLYAFDFSPLD--IYSMGPTATIVCNNQSIESIQYQRVCRLKNST 259
T +Y ++F+ L +YS TIV NNQS +++ QRV L ++
Sbjct: 916 TAVPGVYHYEFTKLSDSLYSDSDAVTIV-NNQSYQAVVLQRVNSLPKAS 963
>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 104
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/70 (27%), Positives = 27/70 (38%)
Frame = +3
Query: 315 CYTLSWQWDPCCKYQEEKNRRHIATLPMLSDLTSASPVVLVHTDNKRKIIFHNAISIAAV 494
CY LS +D C +Y N P+ S SP + H + K H I +
Sbjct: 3 CYFLSKSYDDCSRYYIISNMAFY--FPVYD---SDSPTTVHHDERKESWRSHGFIVCLHI 57
Query: 495 GICLWRLYNT 524
C+ YN+
Sbjct: 58 RCCICCKYNS 67
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 399 TLAVSLYAFDFSPLDIYSMGPTATIVCNNQSIESIQYQRVCR 274
T +++ DF D + + +CNNQS S Q Q++ R
Sbjct: 394 TTGLAVVNTDFPLNDAHHLWNHLENLCNNQSFNSCQLQKITR 435
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -2
Query: 435 LAQQAKQKLDHSTLAVSLYAFDFSPLDIYSMGPTATIVCNNQSIESIQYQRVC 277
L Q Q S A ++ F ++IY++ +C N S E+ Y +C
Sbjct: 34 LGPQEAQSAILSLAAKNMIEFSRHEIEIYNLTAEGENICANGSHEAKVYNEIC 86
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 311 WLLHTIVAVGPML*ISRGEKSKAYSDTANVE*SNF 415
WL H + G I EKSK SD +++ S F
Sbjct: 323 WLFHYLFGFGSTEPIDEEEKSKTASDNTSLQTSLF 357
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 490 AAIDIAL*NIIFRLLSVCTSTTGEAEVRSLNIGSVAICLRFFS 362
A I AL NII + + S + E+R + + + C+RF S
Sbjct: 244 AIISKALGNIIEIITGIANSKQVDDEIRCMALSFIISCIRFKS 286
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 625 YWLSKVKFFTI*IADCKNCILC 690
YWLS +K FT+ A N ILC
Sbjct: 175 YWLSSIKVFTV-AAFIVNGILC 195
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 420 SPVVLVHTDNKRKIIFHNAISIAAVGICLWRLYNTFK*I*C*MYYAK*YKTSTFLSI*VS 599
SP VL H D +KI+ S AVG L + ++ K Y AK K S+
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDK 754
Query: 600 EYYIIVLML 626
E I+ L
Sbjct: 755 EMLAIIKSL 763
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,983
Number of Sequences: 5004
Number of extensions: 58524
Number of successful extensions: 154
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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