Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19h01
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...   207   2e-54
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...   179   4e-46
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    81   2e-16
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.15 
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    31   0.20 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.8  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    26   5.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.8  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score =  207 bits (505), Expect = 2e-54
 Identities = 105/147 (71%), Positives = 120/147 (81%)
 Frame = +3

Query: 96  PIYGPFFGVMGXXXXXXXXXXXXXYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 275
           P+Y PFFGVMG             YGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7   PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66

Query: 276 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 455
           YGLVV+VLI+G L++  +  LY GFI LGAGL+VG +GLAAGFAIGIVGDAGVRGTAQQP
Sbjct: 67  YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQP 124

Query: 456 RLFVGMILILIFAEVLGLYGLIVAIYL 536
           RLFV MILILIFAEVLGLYGLIVA+ L
Sbjct: 125 RLFVAMILILIFAEVLGLYGLIVALLL 151


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score =  179 bits (436), Expect = 4e-46
 Identities = 86/147 (58%), Positives = 107/147 (72%)
 Frame = +3

Query: 96  PIYGPFFGVMGXXXXXXXXXXXXXYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 275
           PIY  FFG  G             YGTA +G GIAA+   RPE++MKS+IPVVM+GII +
Sbjct: 7   PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66

Query: 276 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 455
           YGLV++VLIAG +    +Y L+ GFIHL AGLAVG +G+AAG+AIG+VGD GV+   +Q 
Sbjct: 67  YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQD 126

Query: 456 RLFVGMILILIFAEVLGLYGLIVAIYL 536
           R+FV M+LILIFAEVLGLYGLIV + L
Sbjct: 127 RIFVSMVLILIFAEVLGLYGLIVGLIL 153


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
 Frame = +3

Query: 114 FGVMGXXXXXXXXXXXXXYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 293
           +G++G             +G    GT I   +V  P +  K++I ++   ++AIY L++A
Sbjct: 45  WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104

Query: 294 VLIAGALQE--PANY----PLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 455
           ++ +  + +  PA +      Y GF     G+ VG   L  G  +GI G +     AQ  
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDA 164

Query: 456 RLFVGMILILIFAEVLGLYGLIVAIYL 536
            LFV ++++ IF  VLGL+GLIV + +
Sbjct: 165 SLFVKVLVVEIFGSVLGLFGLIVGLLI 191


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -3

Query: 514  P*RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNP 344
            P RP ++A  ++   PT      +VP  P++P MP   P+A P    A  AP   NP
Sbjct: 1691 PVRPQSAAPPQMSA-PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +3

Query: 240 IIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIV 419
           II   +AG+IA + +++   IAG +          G ++ G  L      LA GF I   
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKIVTS 246

Query: 420 GDAGVRGT 443
           GD  V  T
Sbjct: 247 GDVCVSNT 254


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 445 AVPRTPAS--PTMPMAKPAARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRTATTRP*M 272
           A P  P S  P++PM  PAA P  P+A  AP    PL     AG   AP +  A   P  
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAP----PL----PAGMPAAPPLPPAAPAPPP 478

Query: 271 AIIPA 257
           A  PA
Sbjct: 479 APAPA 483


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -2

Query: 542 CVQVDGDD-KSV--KTQYFSENKNKNHSDE*PRLLSSTT 435
           C++VD +D K +  K+QY +EN N N  +  P L S+TT
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP-LSSNTT 270


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 353 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 240
           DEPF+K     +L+  SN++S+   VD N+    D +D
Sbjct: 48  DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -3

Query: 445 AVPRTPASPTMPMA----KPAARPENPTAKPAPK 356
           +VP+ PA+P +P A    +P A P  P    AP+
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQ 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,645,327
Number of Sequences: 5004
Number of extensions: 79837
Number of successful extensions: 234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)