Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19f17
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.68 
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    28   1.6  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   3.6  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   4.8  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    26   6.3  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   8.4  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 105 LVNHFDIHCLLGS--WN--SGWHLHYCTSVHSVHRGVIWFSRFPII 230
           LV+  DI+C+ GS  W   S  H H    VHSV    I  SR PII
Sbjct: 258 LVHPEDIYCISGSSDWVCVSTQHFHCNIHVHSVSGNAIRKSRNPII 303


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 704 KNIKCII*VLYNFRGHAGDRP 642
           KN+ C++ ++ N  GHAG +P
Sbjct: 121 KNMLCMVDIVVNHMGHAGSKP 141


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 728 TFMVWNTLKNIKCI 687
           T ++W +LKN+KCI
Sbjct: 37  THIIWRSLKNVKCI 50


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 220 FLLSVVQFPKYCAQAMMEGRGFN*FRHNF 306
           FLL+ +Q+ + C ++  E R +  F HNF
Sbjct: 396 FLLADIQWQRVCYKSFRESRTWLHFLHNF 424


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 704 KNIKCII*VLYNFRGHAGDRP 642
           +N+ C+I ++ N   HAGD P
Sbjct: 126 RNMLCMIDIVVNHMAHAGDSP 146


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 640 NSNFNYICDSIVHIYKSH 587
           NS  +Y+CD++  +YKS+
Sbjct: 369 NSIIDYVCDALAALYKSN 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,537
Number of Sequences: 5004
Number of extensions: 66201
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)