Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19f09
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184...   297   5e-81
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...    58   1e-08
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887...    31   1.3  
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876...    30   1.8  
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948...    30   1.8  
10_08_0042 - 14383143-14383628,14383647-14384609,14384697-143864...    29   4.1  
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196...    29   4.1  
05_03_0553 - 15389376-15389499,15391167-15391576                       28   7.1  

>03_06_0508 +
           34417540-34417649,34418239-34418338,34418445-34418478,
           34418559-34418635,34418929-34419005,34419060-34419224,
           34419306-34419420,34419546-34419650
          Length = 260

 Score =  297 bits (730), Expect = 5e-81
 Identities = 145/254 (57%), Positives = 191/254 (75%), Gaps = 17/254 (6%)
 Frame = +2

Query: 50  RDKYSILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQKLYG 229
           R +YSI++PTYNER N+ +I++LI K+L +  V++E+I++DDGSPDGT ++ +QLQ++YG
Sbjct: 9   RREYSIIVPTYNERLNVALIVYLIFKHLPD--VNFEIIVVDDGSPDGTQDIVKQLQQIYG 66

Query: 230 SSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFI----------- 376
            ++++LR R  KLGLGTAY+HG++ ASG+F++IMDADLSHH   I E +           
Sbjct: 67  ENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHMLEISETLEQSPLQLDSYQ 126

Query: 377 ------KLQLKYDYDIVSGTRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGS 538
                 K Q +   D+V+GTRY  +GGV+GW+  RKL SRGAN L Q +L+PG SDLTGS
Sbjct: 127 GYYTDKKKQKETGADVVTGTRYVQNGGVHGWNLMRKLTSRGANVLAQTLLQPGASDLTGS 186

Query: 539 FRLYKKEVLEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEI 718
           FRLYK+ VLE LI SCVSKGYVFQMEMI+RA +  Y I EVPI+FVDRV+G SKLGGSEI
Sbjct: 187 FRLYKRNVLEDLISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEI 246

Query: 719 VQFAKALLYLFATT 760
           V++ K L+YL  TT
Sbjct: 247 VEYLKGLVYLLLTT 260


>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 27/236 (11%)
 Frame = +2

Query: 53  DKY-SILLPTYNERENLPIIIWLIIKYLDE-SGVD----YEVIIIDDGSPDGTSEVARQL 214
           +KY S+++P YNE   LP  +   + YL + S V+    YEV+I+DDGS D TS+VA + 
Sbjct: 111 EKYISLIIPAYNEEHRLPEALTETLNYLKQRSAVEKSFTYEVLIVDDGSTDHTSKVAFEF 170

Query: 215 QKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDAD----LSHHPKFIPEFIKL 382
            + +    + +       G G A   G+  + G  ++++DAD    ++   K   +   L
Sbjct: 171 VRKHKIDNVRVLLLGRNHGKGEAVRKGMLHSRGELLLMLDADGATKVTDLEKLEAQVRAL 230

Query: 383 QLKYDYDIV--SGTRYKGSG---GVYGWDF---KRKLISRG--ANFLTQ-------LMLR 511
             K +  +   S    + S     V+G      K+ L +R    NFL +       L   
Sbjct: 231 AKKAESSLAPSSSPSQRLSDAEIAVFGSRAHLEKQALATRKWYRNFLMKGFHLVVLLTAG 290

Query: 512 PGVSDLTGSFRLYKKEVLEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVD 679
           PG+ D    F+++ +    KL  +   K + F +E++   +     + EV +++ +
Sbjct: 291 PGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKHLRIPMAEVSVNWTE 346


>08_01_0900 +
           8867895-8868938,8869887-8870085,8871500-8871713,
           8871854-8871959,8872077-8872199
          Length = 561

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +2

Query: 632 RQFDYSIGEVPISFVDRVYGESKLGGSEIVQF-AKALLY 745
           +Q +  IGE+P++FV +  G S+L   ++ QF AK ++Y
Sbjct: 487 KQIEPEIGEIPVAFVAKTEG-SELSEDDVKQFVAKEVIY 524


>06_03_1488 +
           30484904-30485134,30485239-30487159,30487255-30487691,
           30487777-30487983
          Length = 931

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 304 LLYPMNVGSSETKLHLARSKHYFRGAIELLQLT 206
           +L P  V  + T LHL++S  YFR  +E +++T
Sbjct: 637 ILSPFIVAQASTVLHLSKSNLYFRPDLERIRIT 669


>03_02_0565 -
           9484045-9484335,9484621-9484686,9484790-9484867,
           9485005-9485157,9485271-9485356,9485445-9485551,
           9485685-9485752,9485890-9485912,9487627-9487732,
           9487772-9487899,9487989-9488065,9488126-9488131,
           9488206-9488264
          Length = 415

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 320 IIIMDADLSHHPKFIPEFIKLQLKYDYDIVSGTRYKGSGGVYG 448
           +I  D DL HH  F P    LQ    +   S   Y G   +YG
Sbjct: 156 MIAADYDLFHHMSFSPSLQNLQSPTFFTTRSSESYLGESSIYG 198


>10_08_0042 -
           14383143-14383628,14383647-14384609,14384697-14386443,
           14387901-14388010,14388767-14389003
          Length = 1180

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +2

Query: 5   VETIQVMEVDSGLIKRDKYSILLPTYNERENLPIIIWLIIKYLDESGV 148
           +E  +VM VD  +     YS+L+  + +R ++  ++WL ++ ++  GV
Sbjct: 315 LEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWL-LREMEAHGV 361


>03_06_0109 -
           31717691-31718311,31719110-31719223,31719316-31719606,
           31719698-31720006,31720098-31720865
          Length = 700

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
 Frame = +2

Query: 65  ILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQ--LQKLYGSSK 238
           + +P  NE+E     I  +   LD    ++ V ++DD     T  + R+  L+     ++
Sbjct: 247 VQIPMCNEKEVYQQSIAAVCN-LDWPRSNFLVQVLDDSDDPTTQTLIREEVLKWQQNGAR 305

Query: 239 IVLRPREMKLGLGTAYIHGIQQASG----NFIIIMDADLSHHPKFI 364
           IV R R ++ G     +      S      F+ I DAD   +P F+
Sbjct: 306 IVYRHRVLRDGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPNPDFL 351


>05_03_0553 - 15389376-15389499,15391167-15391576
          Length = 177

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = -1

Query: 499 LSQKVSSPRYELTLEVPAVDSTTPLVTSTRDNIVIIF*LEFDELWNELWMMAQIRIHYNN 320
           L Q+V SP  E   +   + + +PL+ S      + F L  +++W +LW++AQ + HY +
Sbjct: 39  LQQQVLSPYNEFVRQQYGI-TASPLLQS------VAFQLRNNQVWQQLWLVAQ-QSHYED 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,256,432
Number of Sequences: 37544
Number of extensions: 403265
Number of successful extensions: 899
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)