Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19f09
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125462-6|AAD12857.2| 239|Caenorhabditis elegans Hypothetical ... 343 6e-95
AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical ... 54 8e-08
Z22179-6|CAA80163.2| 165|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z71259-6|CAA95792.1| 328|Caenorhabditis elegans Hypothetical pr... 29 4.8
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 28 6.3
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 28 6.3
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 28 6.3
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 28 6.3
Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical pr... 28 8.4
Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA hai... 28 8.4
AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone stem-... 28 8.4
>AF125462-6|AAD12857.2| 239|Caenorhabditis elegans Hypothetical
protein Y66H1A.2 protein.
Length = 239
Score = 343 bits (844), Expect = 6e-95
Identities = 164/233 (70%), Positives = 186/233 (79%)
Frame = +2
Query: 56 KYSILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQKLYGSS 235
KYSI+LPTYNE+ENLPI IWLI YL E V +EVII+DD SPDGT +A+ LQK YG
Sbjct: 6 KYSIILPTYNEKENLPICIWLIENYLKE--VSHEVIIVDDASPDGTQGIAKLLQKEYGDD 63
Query: 236 KIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDIVSG 415
KI+++PR KLGLGTAY HG+ A G FII+MDADLSHHPKFIPE I LQ KY DIV+G
Sbjct: 64 KILIKPRVGKLGLGTAYSHGLSFARGEFIILMDADLSHHPKFIPEMIALQHKYKLDIVTG 123
Query: 416 TRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKEVLEKLILSCVSK 595
TRYK GGV GWD KRK IS+GANFL Q +L PGVSDLTGSFRLYK+++L KLI VSK
Sbjct: 124 TRYKDGGGVSGWDLKRKTISKGANFLAQFLLNPGVSDLTGSFRLYKRDILSKLIAESVSK 183
Query: 596 GYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEIVQFAKALLYLFA 754
GYVFQMEM+ RA++ Y IGEVPISFVDR +GESKLG EIV +AK LLYLFA
Sbjct: 184 GYVFQMEMMFRAKKSGYRIGEVPISFVDRFFGESKLGSQEIVDYAKGLLYLFA 236
>AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical
protein H43I07.3 protein.
Length = 339
Score = 54.4 bits (125), Expect = 8e-08
Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 17/223 (7%)
Frame = +2
Query: 62 SILLPTYNERENLPIIIWLIIKYLD-----ESGVDYEVIIIDDGSPDGTSEVARQLQKLY 226
S+++P NE E + I++ YL+ + YE+I++DDGS D T+++ Q+
Sbjct: 84 SVIIPAMNEVERIEIMLDDCCDYLEARAEKDKDFTYEIIVVDDGSTDETADIVVQI---- 139
Query: 227 GSSKIVLRPREMKL--GLGTAYIHGIQQASGNFIIIMDAD----LSHHPKFIPEFIK--- 379
G+ + LR +MK G G A G+ +SG I+ DAD + E ++
Sbjct: 140 GARRQNLRVLKMKANRGKGGAVKMGVLHSSGKLILFADADGATKFADFENLEKEMLRTAG 199
Query: 380 ---LQLKYDYDIVSGTRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLY 550
L + IV+ + + + R ++ G + L + D F+L+
Sbjct: 200 GEPLDESFPAVIVASRAHLEAESMAVRSVPRTILMLGFHLLVYTFAARTIKDTQCGFKLF 259
Query: 551 KKEVLEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVD 679
+ + ++ + + F +E+I ++ + EV + + +
Sbjct: 260 TRSIAARIFPVLHIERWAFDVELIFLCERWTVPVKEVSVRWTE 302
>Z22179-6|CAA80163.2| 165|Caenorhabditis elegans Hypothetical
protein F58A4.6 protein.
Length = 165
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -1
Query: 361 ELWMMAQIRIHYNNKISRSLLYPMNVGSSETKLHLA---RSKHYFRGAIELLQL 209
E + AQIR YN + + LL + V + L A R KH+FR ++L +L
Sbjct: 39 EEYSFAQIRAFYNIPVDKKLLVNIQVKNPAQNLDYAWERRLKHHFRYMLDLEKL 92
>Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical
protein F18E2.2 protein.
Length = 622
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 515 GVSDLTGSFRLYKKEVLEKLILSCVSK 595
G+ ++ G F YKKEVL+ L + VSK
Sbjct: 595 GIDEIDGDFEDYKKEVLDALGEALVSK 621
>Z71259-6|CAA95792.1| 328|Caenorhabditis elegans Hypothetical
protein F13G3.6 protein.
Length = 328
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Frame = +2
Query: 62 SILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQKLYGSS-- 235
S+++P N + L + ++ E+ + DDGS D T + + +
Sbjct: 9 SVIIPAKNVEKFLRETLNGLLDQTACENSKIEICLADDGSVDDTVRILENARLEFEEMGM 68
Query: 236 KIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLK 391
+V+ G+G A ++ + G ++ DAD P I ++L K
Sbjct: 69 NVVVTHVPQPGGVGAAKDCAVRSSKGRYLCFNDADDVSSPNRIKSQLELATK 120
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 86 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 217
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 498 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 541
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 86 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 217
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 696 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 739
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 86 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 217
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 764 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 807
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 86 ERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQ 217
ER + PI++ +I+ +++ GVDY + + GS + + +L+
Sbjct: 696 ERRDTPIVLTRLIQEIEKRGVDYSGLYVLCGSVEKKKMLRAELE 739
>Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical
protein R06F6.1 protein.
Length = 367
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 289 SWDTA-SFWKFYYYNGCGFEPSSKVHS 366
SWDT WK Y CG EPS V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285
>Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical
protein C06C3.3 protein.
Length = 576
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 632 RQFDYSIGEVPISFVDRVYGESKLGGSEIV 721
R+FD I E+PI F + +S++ S IV
Sbjct: 479 RKFDVDINEIPIRFEGPMVNKSRINTSRIV 508
>Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA
hairpin-binding protein protein.
Length = 367
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 289 SWDTA-SFWKFYYYNGCGFEPSSKVHS 366
SWDT WK Y CG EPS V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285
>AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone
stem-loop binding proteinCDL-1 protein.
Length = 367
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 289 SWDTA-SFWKFYYYNGCGFEPSSKVHS 366
SWDT WK Y CG EPS V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,590
Number of Sequences: 27780
Number of extensions: 351026
Number of successful extensions: 754
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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