Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19f05
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1082 - 8847795-8848033,8848511-8848724                           28   2.5  
11_01_0788 + 6599962-6602700                                           27   3.3  
09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912...    27   3.3  
12_02_0961 - 24851687-24851962,24852134-24852405,24852521-248529...    27   5.7  
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    27   5.7  
06_02_0087 - 11580046-11580261,11580495-11580620,11581530-115818...    27   5.7  
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412     26   7.6  

>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 49  ARDRVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNREFND 171
           A  +  Y G++A   R  + W      Y  DVL F YN+E++D
Sbjct: 39  AGGKTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHD 81


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 79  SADSTREQWFFQPAKYENDVLFFIYNREFNDA-LELDTIVNASGDRK 216
           +A   +E+W  QP    N  L +I  ++F D  L  D +V   G+RK
Sbjct: 131 NAGKRKERWLQQPDLIPNP-LTYIERKQFQDCLLAQDYLVGIEGNRK 176


>09_04_0348 -
           16890842-16890925,16890942-16891019,16891079-16891266,
           16891414-16891537
          Length = 157

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = -1

Query: 230 SCPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALLPPYTTR 57
           +CP      + +T+V  ++  LN       +   SY+  +   C  + +  +P +T R
Sbjct: 59  TCPLCRGEVKGYTLVEPAREQLNQNKRSCMQDGCSYMGSYGELCKHMEATFIPEFTAR 116


>12_02_0961 -
           24851687-24851962,24852134-24852405,24852521-24852953,
           24853554-24853676,24853681-24853686
          Length = 369

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 127 ENDVLFFIYNREFNDALELDTIV-NASGDRK 216
           END+LFF  N   N +   D ++ +ASG  K
Sbjct: 99  ENDLLFFTCNGRCNGSFSFDVLIFDASGCEK 129


>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
            21824135-21824224,21825033-21825603,21826097-21826734,
            21826978-21827098,21827223-21827337,21828234-21829723,
            21829830-21829901,21830151-21830196,21830413-21830515,
            21830591-21830674,21831035-21831475,21831651-21831746,
            21831896-21832045,21832131-21832274,21832414-21832527,
            21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -1

Query: 227  CPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALLPPYTTRSRA 48
            CP  + +  AF I  +S A  N+   M NRT  S++     +CS+    L  P+    R 
Sbjct: 1455 CPNTI-TMSAFDISGASPAKRNTECSMCNRTGGSFMGCRDVNCSV----LFHPWCAHQRG 1509

Query: 47   L 45
            L
Sbjct: 1510 L 1510


>06_02_0087 -
           11580046-11580261,11580495-11580620,11581530-11581875,
           11582433-11582572,11583273-11583677
          Length = 410

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 4   YNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQ 114
           YN  L +S   C CN +D V+    S D     WF+Q
Sbjct: 150 YNGSLSLSVLQCGCNVKDLVI----SLDG-GASWFYQ 181


>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
          Length = 184

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 90  HQGAMVLPARQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQG 218
           H+G  VLP +      P+LH +    R +G R DR R G   G
Sbjct: 10  HRGPAVLPLQHQDPESPLLHAR---ARRVGDREDRVREGHGGG 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,324,273
Number of Sequences: 37544
Number of extensions: 148588
Number of successful extensions: 417
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)