Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19f05
         (356 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    26   6.7  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    26   6.7  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    26   6.7  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    26   6.7  
U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 106 FFQPAKYENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPEIYSWFI 273
           F   A  E DV F  ++++F    ELD  V     RKA  +  E   L  I  WF+
Sbjct: 669 FANVALRELDVFFANFSKKFEKPEELDVRVEQKERRKA-KNPNERERLDRIPWWFV 723


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 197 TPRETARPLDTTVKSPVFLKST 262
           TP+ + +P  TT KSPV + +T
Sbjct: 399 TPKPSQKPTTTTTKSPVVITTT 420


>U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical
           protein F35A5.2 protein.
          Length = 111

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 121 KYENDVLFFIYNREFND 171
           KY N    F YNRE+ND
Sbjct: 29  KYNNPPFCFAYNREYND 45


>AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 106 FFQPAKYENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPEIYSWFI 273
           F   A  E DV F  ++++F    ELD  V     RKA  +  E   L  I  WF+
Sbjct: 669 FANVALRELDVFFANFSKKFEKPEELDVRVEQKERRKA-KNPNERERLDRIPWWFV 723


>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 117 RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWT 227
           R +R   P++  Q   Q+    +  R+++GR Q  WT
Sbjct: 310 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWT 346


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 117 RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWT 227
           R +R   P++  Q   Q+    +  R+++GR Q  WT
Sbjct: 310 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWT 346


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 117 RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWT 227
           R +R   P++  Q   Q+    +  R+++GR Q  WT
Sbjct: 255 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWT 291


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 117 RQVRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRWT 227
           R +R   P++  Q   Q+    +  R+++GR Q  WT
Sbjct: 352 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWT 388


>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 55  DRVVYGGNSADSTREQWFFQPAKYE 129
           +R+++ G +AD T  +W +   KY+
Sbjct: 2   ERLIHWGINADETYSKWLYDENKYQ 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,156,811
Number of Sequences: 27780
Number of extensions: 128435
Number of successful extensions: 411
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)