Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19e24
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 229 4e-61
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb... 33 0.056
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 30 0.39
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 30 0.39
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.39
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 0.68
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.4
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 6.4
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 6.4
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 8.4
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 8.4
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 229 bits (559), Expect = 4e-61
Identities = 111/212 (52%), Positives = 153/212 (72%), Gaps = 7/212 (3%)
Frame = +3
Query: 117 RDQVRYASQALPQLSSEKYNVKRKQFGTVQESDINYFKSILSEERVL-------TDENDV 275
R+ +R+ + S K + ++ + E D+ FKSI+ ++ L TD D+
Sbjct: 23 RNALRFVHKPAFTFESYKSLHRDPKYAKLSEQDVQVFKSIIGKDGSLIDGLDKSTDPADL 82
Query: 276 LPFNIDWIKNCRGQSKVVLKPRSTEEVSKIVKYCNDKHLAVCPQGGNTGLVGGSVPVFDE 455
FNIDW+ RG++++ LKP++T++VS+I+KYCN K LAV PQGGNTGLVGGSVPVFDE
Sbjct: 83 DAFNIDWMNKYRGKTQLALKPKTTQQVSEILKYCNQKKLAVVPQGGNTGLVGGSVPVFDE 142
Query: 456 VVLCLGLLNKIISLDEISGVLICEAGCILESLDTCVRERNLIMPLDLGAKGTCQIGGNAS 635
+VL LGL+N+I + DEISGV+ ++G ILE+ D + E+ + PLDLGAKG+CQ+GG A+
Sbjct: 143 IVLNLGLMNQIHTFDEISGVITLDSGVILENADNFLAEKGYMFPLDLGAKGSCQVGGCAA 202
Query: 636 TNAGGLRLLRYGNLHGSILGIEAVKADGTVID 731
T AGGLRLLRYG+LHGSILG+EAV DGT++D
Sbjct: 203 TAAGGLRLLRYGSLHGSILGMEAVLPDGTILD 234
>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 316
Score = 32.7 bits (71), Expect = 0.056
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 486 FCSEDQDKERLHRRPALSLPPVQC-SRLADIPPNVCHYNT*QFSKPPLCFWVLKQLLTAL 310
F S DK +L R S+ P S L+ I P H N S P W++ QL+TAL
Sbjct: 252 FVSPSTDKAQLLNRFRESIRPTTSNSSLSGIIPGATH-NVGPKSSPEALKWLINQLITAL 310
Query: 309 GNF 301
+F
Sbjct: 311 RSF 313
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 29.9 bits (64), Expect = 0.39
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 623 TNLTSTFCP*VQWHY*IALTDTCI*AFKDASRFTNENT 510
T +T+ F P +WH+ DT + FK A F +E+T
Sbjct: 433 TEVTNAFAPNKRWHF-----DTLLRVFKSAGNFVSEST 465
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 29.9 bits (64), Expect = 0.39
Identities = 30/146 (20%), Positives = 61/146 (41%)
Frame = +3
Query: 291 DWIKNCRGQSKVVLKPRSTEEVSKIVKYCNDKHLAVCPQGGNTGLVGGSVPVFDEVVLCL 470
+W K S + P++ E++ +I+ N + G G + +L L
Sbjct: 19 NWAKTFSAISLGLRCPKTEEQLREILVDANSNGKKIRVVGA--GHSPSDIVCTSGYLLSL 76
Query: 471 GLLNKIISLDEISGVLICEAGCILESLDTCVRERNLIMPLDLGAKGTCQIGGNASTNAGG 650
+NK++S D S + +AG + ++ +P+ +G+ + G ST G
Sbjct: 77 DKMNKVVSFDPDSLSITVQAGIRFYQVQEILQNLGYSLPI-VGSISETSVSGIMSTCTHG 135
Query: 651 LRLLRYGNLHGSILGIEAVKADGTVI 728
L++ L I + + ADG+++
Sbjct: 136 -SSLQHQVLPHYIKSMRIMLADGSIV 160
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.9 bits (64), Expect = 0.39
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 153 QLSSEKYNVKRKQFGTVQESDINYFKSILSEERVLTDENDV---LPFNIDWIKNCRGQSK 323
QL K ++ + T+QE D S + E L D++ + L NI+ + N + K
Sbjct: 1503 QLQEAKEKIQVDE-STIQELDHEITASKNNYEGKLNDKDSIIRDLSENIEQLNNLLAEEK 1561
Query: 324 VVLKPRSTEEVSKIVKY 374
+K STE+ S+I+++
Sbjct: 1562 SAVKRLSTEKESEILQF 1578
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 105 NRIIRDQVRYASQALPQLSSEKYNVKRKQF-GTVQESDIN 221
N + RD++ + QAL Q + + + RK F T++ES N
Sbjct: 95 NSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESSSN 134
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 481 FRRPRQRTTSSKTGTEPPTSPVFPP 407
FR T SS+ + PPTSP+ P
Sbjct: 338 FRPKTSETVSSEVVSSPPTSPLHSP 362
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 129 RYASQALPQLSSEKYNVKRKQFGTVQESDINYFKSILSEERVLTDENDVL 278
R S P + S ++ KRK+ G+ E+D + + L R E D L
Sbjct: 2373 RNESDGFPHIYSRNHD-KRKENGSQGEADNSNYSGSLMRRRTNDQEEDAL 2421
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 360 KIVKYCNDKHLAVCPQGGNTGLVGGSVPVFDEVVLCLGLLNKIISLDEISGVLICE 527
+I K +K AV G L G V V CLG+ I S+ + +G+ IC+
Sbjct: 68 RIAKPPKEKSWAVNVLGIGHSLEAGLAQVTFGVGSCLGITKFIYSIFKQTGIWICK 123
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 489 ISLDEISGVLICEAGCILESLDTCVRERNLIMPLDLGAKGTCQIGGNASTNAGGLRLLRY 668
I ++ G++ C+ I + L + V NL +P+ +GT Q N GLR+ +
Sbjct: 343 IFVNIFGGIVRCDV--IAKGLISVVSALNLNIPIICRLQGTNQGAAKEVINNSGLRIFSF 400
Query: 669 GNL 677
+L
Sbjct: 401 DDL 403
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.4 bits (53), Expect = 8.4
Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 21/209 (10%)
Frame = +3
Query: 72 KSVVFLLRCNSNRIIRDQVRYASQALPQLSSEKYNVKRKQFGTVQES----DINYFKSIL 239
KSV FL+ ++R +R Y +LS K K+ E +I S
Sbjct: 346 KSVHFLISAATDRSLRAVSLYQDSQSTELSQGSVISKAKKLNVRPEELKLPEITALSSSN 405
Query: 240 SEER----VLT-DENDVLPFNIDWIKNCRGQSKVVLKPRSTEEVSKIVKYCNDKHLAVCP 404
+ E+ VLT +ND +W GQ + T + + + C ++ C
Sbjct: 406 TREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVL-----PTSDGTSVRSVC----VSCC- 455
Query: 405 QGGNTGLVGGSVPVFDEVVLCLGLLNKIISLDEISG-----VLICEAGCIL--ESLDTCV 563
GN GL+G S V D + G+ K +SG V++ IL SLD +
Sbjct: 456 --GNFGLIGSSKGVVDVYNMQSGIKRKSFGQSSLSGKPVTAVMLDNVNRILVTASLDGIL 513
Query: 564 R-----ERNLIMPLDLGAKGTCQIGGNAS 635
+ + NLI LD+G+ T I ++S
Sbjct: 514 KFWDFNKGNLIDSLDVGSSITHAIYQHSS 542
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 165 EKYNVKRKQFGTVQESDINYFKSILSEERVLTDENDVLP 281
EK N+K + E D + + E V TD N +P
Sbjct: 1152 EKANIKTEMKSETVEGDNKELRETMKGENVQTDSNAAVP 1190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,951
Number of Sequences: 5004
Number of extensions: 66913
Number of successful extensions: 205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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