Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19e24
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.32 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.0  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 102 SNRIIRDQVRYASQALPQLSSEKYNVKRKQFGTVQ 206
           SNRI R++V    Q +    + ++NV    FG +Q
Sbjct: 37  SNRISRNRVLLRGQCISSRRNGRHNVHSLAFGAIQ 71


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 300 KNCRGQSKVVLKPRSTEEVSKIVKYCNDKHLAVCPQGG 413
           K C    +  L P ST  V   ++ C  +H  VC   G
Sbjct: 85  KYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCASNG 122


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 435 SLPPVQCSRLADIPPNVC 382
           SLPPV  ++  DI   VC
Sbjct: 294 SLPPVSYTKAIDIWTGVC 311


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 435 SLPPVQCSRLADIPPNVC 382
           SLPPV  ++  DI   VC
Sbjct: 294 SLPPVSYTKAIDIWTGVC 311


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 684 NHVSFRIGEVSDLLHWCWHYHQFDKY 607
           N V F  G +SDL   CW+   F +Y
Sbjct: 317 NGVLF-FGLLSDLAIGCWNSEHFFEY 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,154
Number of Sequences: 438
Number of extensions: 4500
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)