Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19e23
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   6.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   6.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   6.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   6.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = +1

Query: 196 GKCYCADGFVPNQFHDRCVPCP 261
           G C+C  G+  +     C  CP
Sbjct: 245 GGCHCKPGYQADVEKQECTECP 266


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 580  RDAPPRYSRTPTTDIAVYPAIAYLNSGFIHDSSIPPPP 693
            R  P R  R PT D++  P+    N       + PP P
Sbjct: 1363 RPVPERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTP 1400


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 576 ITGCTTKVFQDTNNGYSRVSSYSIS 650
           I+  + K   + NN Y ++  Y+I+
Sbjct: 82  ISSLSNKTIHNNNNNYKKLQYYNIN 106


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 576 ITGCTTKVFQDTNNGYSRVSSYSIS 650
           I+  + K   + NN Y ++  Y+I+
Sbjct: 82  ISSLSNKTIHNNNNNYKKLQYYNIN 106


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 576 ITGCTTKVFQDTNNGYSRVSSYSIS 650
           I+  + K   + NN Y ++  Y+I+
Sbjct: 82  ISSLSNKTIHNNNNNYKKLQYYNIN 106


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 576 ITGCTTKVFQDTNNGYSRVSSYSIS 650
           I+  + K   + NN Y ++  Y+I+
Sbjct: 82  ISSLSNKTIHNNNNNYKKLQYYNIN 106


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 576 ITGCTTKVFQDTNNGYSRVSSYSIS 650
           I+  + K   + NN Y ++  Y+I+
Sbjct: 315 ISSLSNKTIHNNNNNYKKLQYYNIN 339


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = -2

Query: 663 KSRVQICYSWIHGYIRCWCPGIPW 592
           ++R+ +   WI  ++ C+ P + W
Sbjct: 181 RARLLVATVWILSFVICFPPLVGW 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,840
Number of Sequences: 438
Number of extensions: 5230
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)