Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19e12
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0373 - 13194723-13195847,13196219-13196809 31 1.1
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894... 30 1.9
11_06_0254 - 21721667-21721718,21722025-21722647 30 1.9
12_02_0046 + 12830974-12832386 29 3.3
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 29 3.3
04_04_1129 - 31107892-31110246 29 3.3
03_06_0715 + 35693002-35694585 29 3.3
02_04_0311 + 21936812-21937861 29 3.3
04_04_0057 + 22410167-22411330 29 4.4
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 29 4.4
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 29 5.8
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947... 28 7.6
10_08_1048 - 22553676-22554866 28 7.6
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 28 7.6
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342... 28 7.6
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 469 VSEFGGTWFQLRR*WRVETRGVIDFDLRCSAR 374
V+E G + QL+R WR + RG++D D R R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533
>12_02_1036 -
25587313-25587890,25589209-25589272,25589356-25589448,
25589533-25589683,25590474-25590539,25590594-25590907
Length = 421
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 569 SEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLL 748
+E P + P PP + AS S P + LLR+ V PP PP PA LL
Sbjct: 4 AEDPAKPPPPPPPQLEASG----SDPDDPLLRDRVVVIAPPPPP--PPPPPPPAPAPALL 57
Query: 749 L-SYAQQAQCTALAPPA 796
+ A+ PPA
Sbjct: 58 APAENASAEAAFAVPPA 74
>11_06_0254 - 21721667-21721718,21722025-21722647
Length = 224
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 590 DPQPPAAVLAS-SPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLLLSYAQQ 766
DP PA S +V P +E VYG T P + PG + + +AQ+
Sbjct: 47 DPSSPAIHFGDGSGYVDPDPGHSFQAIYEQVYGDAYTWGTTSPATKPGVPSPPMSGFAQE 106
Query: 767 AQ 772
A+
Sbjct: 107 AE 108
>12_02_0046 + 12830974-12832386
Length = 470
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Frame = +2
Query: 578 PERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQL---- 745
P RV PQP L ++P + P + T A L PP P A ++
Sbjct: 238 PRRVAPQPAPPSLRTAPAAVAPPRQV---PVITQQQAPPLKRPAPPVPSPPCAKKIRGPV 294
Query: 746 LLSYAQQAQCTALAPPAPW 802
S A + C A + P PW
Sbjct: 295 SASPAARQSCVAASAPPPW 313
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 590 DPQPPAAVLAS--SPFVTSQPTEELLREFETVYGAVELTHL 706
DP PA V S SP + QP EL+RE T+ +E+ HL
Sbjct: 78 DPDHPAPVNLSLESPMLKVQPANELIREVATL--ELEIKHL 116
>04_04_1129 - 31107892-31110246
Length = 784
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 548 PSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEEL-LREFETV--YGAVELTHLTPPQ 718
PS+ +S +P + P P +LA+S S PT L L + V + L PP+
Sbjct: 103 PSLSAALSALPSQ--PDPALLLLAASSLPASDPTPLLALVAWARVQPWFVPSDDTLLPPR 160
Query: 719 SPPGPATQLL 748
PP P QLL
Sbjct: 161 RPPRPGHQLL 170
>03_06_0715 + 35693002-35694585
Length = 527
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 629 FVTSQPTEELLREFETVYGAVELTHLTPPQSPPGPATQLLLSYAQQAQ 772
+V P + +E VYG + P +PPG + + +AQQA+
Sbjct: 66 YVDPDPGHSMQAIYEQVYGTPFVDARATPITPPGVPSPPMAGFAQQAE 113
>02_04_0311 + 21936812-21937861
Length = 349
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 524 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEE 655
WLE V P N+ + P P PPA +SSP + EE
Sbjct: 154 WLEGHVTCPLCRANLEKQPA---PSPPAVEFSSSPAAAAAAAEE 194
>04_04_0057 + 22410167-22411330
Length = 387
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 524 WLEEKVDLPSIFENISEVPERVDPQPPAAVLASSP 628
WLE +V P N+ + P P P AA + SP
Sbjct: 164 WLESRVTCPLCRANLEKPPPPPPPPPAAAAASPSP 198
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 584 RVDPQPPAAVLASSPFVTSQPT-EELLREFETVYGAVELTHLTPPQSPPGPATQL----- 745
+V P PP+A + S P + P + ET++ + + PQ+PP P Q
Sbjct: 302 QVPPVPPSAPVPSVPALPRDPYYAPPAQPTETMHQQYQAPPVPQPQAPPAPPQQYQTPPQ 361
Query: 746 LLSYAQQAQCTALAPPAP 799
Y+Q Q + P P
Sbjct: 362 FPQYSQPPQSGMVNPSTP 379
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 527 LEEKVDLPSIFENISEVPERVDPQPPAA-VLASSPFVTSQPTEELLREFETVYGAVELTH 703
L E + L +IF N SE+ + P P V AS+ FV++ + ++ V A H
Sbjct: 2441 LAEVLHLQTIFRNPSELKSYLLPNPDRCNVPASTMFVSN---DSIVVVDVNVPAAHVALH 2497
Query: 704 LTPPQSPPGPATQLLLSYAQQA 769
P +P G T L + + A
Sbjct: 2498 HWQPNTPDGQGTPFLFHHGRNA 2519
>12_01_0951 -
9471391-9471597,9471857-9471966,9473173-9473278,
9474719-9475060,9475598-9475647,9476745-9477717
Length = 595
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 601 PGSGSSFKSFCDLAAH*RTAAGIRNGLWCCR 693
P GS S C + TA G+ GLWCCR
Sbjct: 397 PSCGSYTASACPIYVESGTA-GVVIGLWCCR 426
>10_08_1048 - 22553676-22554866
Length = 396
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 584 RVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAV-ELTHLTPPQSPPGPATQLLLSYA 760
R PP +L + E+LLR+ + V +L HL PP P LL Y+
Sbjct: 45 RASTAPP--LLLPAAHQAQAQDEQLLRQLTAIRATVSQLNHLRSSTPPPPPPPPELLLYS 102
Query: 761 QQAQCTALAPPAP 799
+ A + P
Sbjct: 103 RLAPLASACSAHP 115
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 473 LLQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVD 592
L+ +L C ++N+ +LE+++ P +FE + +R+D
Sbjct: 754 LVLELSELCAEQNLEVWYLEDELISPCMFEELQNQGDRID 793
>09_04_0489 -
18031187-18031579,18032033-18034030,18034102-18034234,
18035360-18036108
Length = 1090
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 593 PQPPAAVLASSPFVTSQPTEELLREF--ETVYGAVELTHLTPPQSPPGPATQLLLSYAQQ 766
P +A A +P + +E L F + ++ + + +PPQ P P Q L++ A
Sbjct: 77 PATASAAAAPAPAPADEDSENRLIAFHLQRLFAGEDPSFASPPQIAPQPQPQTLITPAIA 136
Query: 767 AQCTALAPPAP 799
A T AP P
Sbjct: 137 AAVTP-APSLP 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,518,550
Number of Sequences: 37544
Number of extensions: 448284
Number of successful extensions: 1486
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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