Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19e11
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   4.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   4.8  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    24   4.8  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    23   8.5  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    23   8.5  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 112 FFLFSICKRNSII*F*NVLVVLAVPS 189
           FFLF  C RN I      LV L +PS
Sbjct: 8   FFLFPPCHRNKITEADKSLVDLLIPS 33


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 70  TKLLTKYYIGIFCFFFLFSICKRNSII*F 156
           T  +  ++   F FFF FS C+R  I  F
Sbjct: 68  TFTIEAFFYWFFFFFFFFSHCRRFHIAIF 96


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 287 CIIFTFQCSPLPKYDCVNLSYFSK 216
           C I TFQ   +P YD   +  F K
Sbjct: 487 CYILTFQLLQIPLYDLQQMFAFKK 510


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 191 IDGTANTTKTF*NQIIEFLLQIENKKKK 108
           + G  N++    N   EFL  +E+ KKK
Sbjct: 224 VSGNTNSSSVSGNHAAEFLEYVESLKKK 251


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 88  YYIGIFCFFFLFSICKRNSII 150
           +YIG+   FFL S C    II
Sbjct: 204 FYIGLLGLFFLGSACNFGRII 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,018,699
Number of Sequences: 5004
Number of extensions: 15006
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)