Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19e11
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0831 + 28495516-28495701,28496862-28497010,28498447-28498585     28   1.8  
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...    26   7.4  
02_04_0612 + 24370446-24373044,24373135-24373541                       26   7.4  
06_01_1192 + 10249316-10249431,10251263-10251279,10251890-102537...    25   9.7  
06_01_1190 + 10231166-10231222,10231318-10234122                       25   9.7  
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865...    25   9.7  

>04_04_0831 + 28495516-28495701,28496862-28497010,28498447-28498585
          Length = 157

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -3

Query: 317 FFLVIKFNYICIIFTFQCSPLPKYDCVNLSYFS 219
           + L++ F+++ ++  F C+P   +  VNL++F+
Sbjct: 30  YILILFFSWLLVLSVFGCTPGMAWTFVNLAHFA 62


>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
            48730-48840,48935-49195,49415-49638,49735-49855,
            50673-51214,51302-51488,51569-51895,52047-52197,
            52287-52424,52918-53013,53276-53357,54411-54679,
            54769-54882,55050-55288,55488-55715,55799-55951,
            56479-56616,57061-57188,57598-57718,58142-58306,
            59486-59633,59772-59898,60025-60118,60119-60268,
            60577-60624,60712-60819,61040-61114,61225-61275,
            61341-61487,61584-61714,61944-62031,62204-62266,
            62336-62582,62830-62981,63056-63126,63214-63370,
            63520-63687
          Length = 2323

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 296  NYICIIFTFQCSPLPKYDCVNLSYFSKI 213
            NY+ I F     P PK DCV   Y SKI
Sbjct: 1087 NYLAI-FRADSVPKPKVDCVKGVYDSKI 1113


>02_04_0612 + 24370446-24373044,24373135-24373541
          Length = 1001

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3

Query: 155 NQIIEFLLQIENKKKKQNIPI*YFVNNLVAYHPDQLRMNNTLTYV 21
           N ++  L ++ N K+ Q + +  + NNL    PD+L   ++LTY+
Sbjct: 113 NNLLGSLPRLGNLKQLQALYL--YKNNLTGIIPDELTNCSSLTYI 155


>06_01_1192 +
           10249316-10249431,10251263-10251279,10251890-10253797,
           10253880-10254492,10255390-10255392,10257635-10257713,
           10258177-10258236,10258536-10258586,10258800-10258948,
           10260937-10260985
          Length = 1014

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 71  VAYHPDQLRMNNTLTYVIKKSMK 3
           + YH D L+MN+ +T +++K+ K
Sbjct: 242 LVYHLDFLQMNDAITLLLRKTNK 264


>06_01_1190 + 10231166-10231222,10231318-10234122
          Length = 953

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 71  VAYHPDQLRMNNTLTYVIKKSMK 3
           + YH D L+MN+ +T +++K+ K
Sbjct: 249 LVYHLDFLQMNDAITLLLRKTNK 271


>04_04_1212 -
           31786063-31786195,31786275-31786398,31786486-31786597,
           31786691-31786822,31786929-31787111,31787351-31787479,
           31787618-31787788,31788142-31788244,31788628-31788737,
           31789158-31789265,31789337-31789512,31790082-31790352,
           31790524-31790738,31791042-31792574,31792665-31792728,
           31793171-31793251
          Length = 1214

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -3

Query: 257 LPKYDCVNLS 228
           LPKYDC+NLS
Sbjct: 806 LPKYDCLNLS 815


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,629,415
Number of Sequences: 37544
Number of extensions: 70737
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)