Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19e06
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...   111   1e-25
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...   108   1e-24
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    60   3e-10
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   2.3  
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    27   3.0  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    26   5.2  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   6.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score =  111 bits (267), Expect = 1e-25
 Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 11/195 (5%)
 Frame = +2

Query: 182 PITIWLPRYTLESLFRDLIAGITVGLTSIPQGIAYAMIAGLPPQIGLYSSIFPGIVYSLF 361
           PI  WLPRY    L  D IAGITVG   +PQG++YA +A LP Q GLYSS     +Y +F
Sbjct: 121 PIMNWLPRYNWNWLVYDFIAGITVGCVVVPQGMSYAKVATLPAQYGLYSSFVGVAIYCIF 180

Query: 362 GSCKDITLGPTAILSALVAKYVA--YSDDFAYLA-------SFLSGCIVXXXXXXXXXXX 514
            + KD+++GP A++S + +K +A   + D  Y A       + L+G I            
Sbjct: 181 ATSKDVSIGPVAVMSLVTSKVIANVQAKDPNYDAAQIGTTLALLAGAITCGLGLLRLGFI 240

Query: 515 XXXXSKPVIAGFTTAAALQIGASQLRSLFGVSG--SSGNTFVKAIINFFRNITTIQLNDS 688
                 P +AGFTT +AL I A Q+ SL G      +     + II   +N+   ++ D+
Sbjct: 241 IEFIPVPAVAGFTTGSALNIMAGQVSSLMGYKSRVHTNAATYRVIIQTLQNLPHTKV-DA 299

Query: 689 LLGVVTIISLMLLKH 733
             G+V++  L L+++
Sbjct: 300 AFGLVSLFILYLVRY 314


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score =  108 bits (259), Expect = 1e-24
 Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 10/198 (5%)
 Frame = +2

Query: 170 KIRLPITIWLPRYTLESLFRDLIAGITVGLTSIPQGIAYAMIAGLPPQIGLYSSIFPGIV 349
           K   PI  WLP Y    L  DLIAGITVG   +PQG++YA +A LP + GLYSS     +
Sbjct: 104 KSLFPIIEWLPNYNPYWLINDLIAGITVGCVVVPQGMSYAKVATLPSEYGLYSSFVGVAI 163

Query: 350 YSLFGSCKDITLGPTAILSALVAKYVA--YSDDFAYLA-------SFLSGCIVXXXXXXX 502
           Y  F + KD+++GP A++S + AK +A   + D  Y A       + L+G I        
Sbjct: 164 YCFFATSKDVSIGPVAVMSLITAKVIANVMAKDETYTAPQIATCLALLAGAITCGIGLLR 223

Query: 503 XXXXXXXXSKPVIAGFTTAAALQIGASQLRSLFGVSGS-SGNTFVKAIINFFRNITTIQL 679
                     P +AGFTT +AL I + Q+ +L G     +       II   +++    +
Sbjct: 224 LGFIIEFIPVPAVAGFTTGSALNILSGQVPALMGYKNKVTAKATYMVIIQSLKHLPDTTV 283

Query: 680 NDSLLGVVTIISLMLLKH 733
            D+  G+V++  L   K+
Sbjct: 284 -DAAFGLVSLFILFFTKY 300


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 16/197 (8%)
 Frame = +2

Query: 179 LPITIWLPRYTLESLFRDLIAGITVGLTSIPQGIAYAM-IAGLPPQIGLYSSIFPGIVYS 355
           +P+  WLP Y+L ++  D++AG +    S+P  +++A    G+PP   L  +    I+Y 
Sbjct: 63  IPVLHWLPNYSLRNIIWDVLAGCSTACLSVPIALSFAQTFLGVPPIYILTGTAIGPILYC 122

Query: 356 LFGSCKDITLGPTAILSALVA-----KYVAYSD---DFAYLA----SFLSGCIVXXXXXX 499
           LF +C  I++GP A +  L+A     + ++ +D   + A L     +F++G I       
Sbjct: 123 LFTACPLISIGPEAGMCLLIAENIHQRVLSKADVPQETAILVTGLIAFIAGIINLAAGLF 182

Query: 500 XXXXXXXXXSKPVIAGFTTAAALQIGASQLRSLFGVSG--SSGNTF-VKAIINFFRNITT 670
                    S  ++ G   + ++ I  +Q    FG SG    G+ F +  ++   RN++ 
Sbjct: 183 RLGFLDALVSPVLLRGCILSISMIIMINQGSVFFGFSGVKYKGSDFPIDKLMFLIRNMSK 242

Query: 671 IQLNDSLLGVVTIISLM 721
             +  ++L  +TI  L+
Sbjct: 243 ANIYTTILSCITISLLI 259


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +1

Query: 133 ENSGKVLRPGLVEDKTSNHDMASTLYIGI----SV*GSYC-RYNGRPHVNTSRHCLRNDR 297
           E S K    G  EDK SN D  ST ++ I     +    C   N   H+   +HC ++DR
Sbjct: 348 ETSSKNTESGFTEDKKSNED-TSTNFVTIKQEKELLKCLCDTLNAIAHILFLKHCRKSDR 406


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 206 YTLESLFRDLIAGITVGLTSIPQGIAYAMI 295
           Y+L S F  L AG+ VGLT +  G A  ++
Sbjct: 85  YSLFSGFIHLSAGLAVGLTGVAAGYAIGVV 114


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 244 TGNK-IPKQRFQCITWKPYRD 185
           TG+K +P   FQC  W P RD
Sbjct: 258 TGHKDLPPSFFQCCGWDPLRD 278


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 332  IFPGIVYSLFGSCKDITLGPTAILSALVAKYVAYSDDFAYLASFLSGC 475
            I P  + SL   C D    P A +S  V ++ AY+   + L     GC
Sbjct: 1391 IIPDKINSL---CSDCLKNPCATISKAVTQHNAYNKKLSLLFDICRGC 1435


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 696  PSKESFS*IVVMFLKKLMMAFTNVLPEEPETPNRDLS 586
            PSKE  S ++V FL   +M  T        +PN + +
Sbjct: 1545 PSKEQMSSVIVSFLLDELMDLTETRQFSDRSPNSEFT 1581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,089
Number of Sequences: 5004
Number of extensions: 72229
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)