Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19d24
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    85   8e-19
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.7  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 84.6 bits (200), Expect = 8e-19
 Identities = 52/194 (26%), Positives = 102/194 (52%), Gaps = 9/194 (4%)
 Frame = +1

Query: 25  MSHEWKDKVVFITGAATGIGESVVRILLDEGVKHIAILDIAEEAGQSLQAELNSKYGNKT 204
           M   W D+V  +TGA +GIG+ ++  L+ +G+K I I    ++  ++L  EL SK G K 
Sbjct: 1   MEQNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKM-KTLVEELKSKPG-KL 58

Query: 205 KFYRSDVTDEEHFLGILNAVVQEQGGIDVVINNA------ALMNDSIGIYKKAIEVNVTA 366
              + D++++   L ++  V +  G ID++INNA       L ND +  +KK  ++N+  
Sbjct: 59  VPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLG 118

Query: 367 LITSTLKAIEIMGKHSGGKGGTVINVSSVAALT---QSHVMPIYFATKSAVLQFSNCIGR 537
           L     + +++M K  G   G ++N++  + L     +   P Y A+K A+   ++C+  
Sbjct: 119 LTCMIQEVLKLM-KKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRS 177

Query: 538 PEHFSKTGVRVLTV 579
                ++ ++V+++
Sbjct: 178 ELAQCESNIKVISI 191


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 698 SLRWNMKPFFSWSKH 654
           SL W + P F W+++
Sbjct: 179 SLGWTIAPMFGWNRY 193


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 698 SLRWNMKPFFSWSKH 654
           SL W + P F W+++
Sbjct: 55  SLGWTIAPMFGWNRY 69


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -1

Query: 658 SMKILSTYQKCLVSRRSTTRCLLHQSTLSVLGPRFSKSVPVYRYNY 521
           +M  L+  +K +    S   C+   +T+   GP  +K    + Y Y
Sbjct: 216 TMVKLNWPKKRVTKMSSINPCIFDNATIVNNGPEAAKMAKAFTYTY 261


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 96  DHRFTDARCSTGY 58
           D+ FT+ RC  GY
Sbjct: 290 DYGFTECRCDPGY 302


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 66  TGYKNYFIFPFVRHLQRSVNK 4
           T +KN  IF   +H++ ++NK
Sbjct: 164 TNFKNSNIFQLKQHMRDTMNK 184


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 312 HERQYWHLQKSH*GQRDRLNNKYI 383
           H R+ W +Q+    + +RL  K I
Sbjct: 38  HRREVWLIQQEREREHERLMKKMI 61


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 312 HERQYWHLQKSH*GQRDRLNNKYI 383
           H R+ W +Q+    + +RL  K I
Sbjct: 38  HRREVWLIQQEREREHERLMKKMI 61


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 312 HERQYWHLQKSH*GQRDRLNNKYI 383
           H R+ W +Q+    + +RL  K I
Sbjct: 38  HRREVWLIQQEREREHERLMKKMI 61


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 312 HERQYWHLQKSH*GQRDRLNNKYI 383
           H R+ W +Q+    + +RL  K I
Sbjct: 38  HRREVWLIQQEREREHERLMKKMI 61


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 312 HERQYWHLQKSH*GQRDRLNNKYI 383
           H R+ W +Q+    + +RL  K I
Sbjct: 38  HRREVWLIQQEREREHERLMKKMI 61


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 312 HERQYWHLQKSH*GQRDRLNNKYI 383
           H R+ W +Q+    + +RL  K I
Sbjct: 38  HRREVWLIQQEREREHERLMKKMI 61


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 312 HERQYWHLQKSH*GQRDRLNNKYI 383
           H R+ W +Q+    + +RL  K I
Sbjct: 38  HRREVWLIQQEREREHERLMKKMI 61


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 312 HERQYWHLQKSH*GQRDRLNNKYI 383
           H R+ W +Q+    + +RL  K I
Sbjct: 38  HRREVWLIQQEREREHERLMKKMI 61


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 452 TEETLITVPPLPP 414
           T+ET   +PPLPP
Sbjct: 630 TQETEERLPPLPP 642


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,643
Number of Sequences: 438
Number of extensions: 4564
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)