Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19d21
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 144 1e-35
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 31 0.12
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 31 0.21
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.5
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 28 1.5
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 2.6
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 27 3.4
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c... 27 3.4
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 26 4.5
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 26 4.5
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 25 7.9
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 25 7.9
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 7.9
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 144 bits (348), Expect = 1e-35
Identities = 69/127 (54%), Positives = 88/127 (69%), Gaps = 3/127 (2%)
Frame = +1
Query: 331 QMELLIMRIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGGITCVLQDGRVFEKAGVNISV 510
QME LI+ +Q E LE + + KF D+WT+ EGG GI+CV+QDG VFEK GVN S+
Sbjct: 12 QMEKLILDVQQEIVAGLEAVDGQ--KFFQDKWTKGEGGYGISCVIQDGNVFEKGGVNTSI 69
Query: 511 VSGKLPPAAIQQMRSRGKNLQNA--ELPFFAAGVSAVIHPRNPMVPTIHFNYRYFEVQDK 684
V GKL A+Q+MR+ + + ELPFFAAG+S VIHPRNPM PT H NYRYFE+ +
Sbjct: 70 VQGKLNQDAVQRMRANHEGIDRTAKELPFFAAGISMVIHPRNPMAPTTHLNYRYFELVNS 129
Query: 685 NGVQ-WW 702
+G + WW
Sbjct: 130 DGKKIWW 136
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 31.5 bits (68), Expect = 0.12
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 79 FLEKMSFNILFRSFQTL--SYVGTYKKIKNRPLRLYCAAVLGTGIVAYNQYQSKAKMKE 249
F +S NI R+F+TL S++ Y+ NR V+ TGI +YQS K+KE
Sbjct: 55 FGSAISSNISQRNFKTLRASHLSQYRDC-NRENNTEDKNVISTGIAVNEKYQSVLKLKE 112
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 30.7 bits (66), Expect = 0.21
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +1
Query: 106 LFRSFQTLSYVGTYKKIKNRPLRLYCAAVLGTGIVAYNQYQSKAKMKEIMQLKNYMANPI 285
L F+T S V Y +R +C L Y +S+ + ++++ + + +
Sbjct: 563 LINFFRTRSIVAKYLPSASR----FCVESLKRQKANYQMSRSQEPVIPLIEMHDILFHGN 618
Query: 286 TPVEQLEQNKDDMKTQMELLIMRI-QAEFCRALEKEEDKE 402
P+EQ+ K +T E ++ R+ Q R E E D E
Sbjct: 619 GPLEQIHMTKATARTLWEAIVERVEQVGSVRTRESEVDGE 658
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 163 RPLRLYCAAVLGTGIVAYNQYQSKAKMKEI 252
R R YC V G+ I YNQ + K K E+
Sbjct: 245 RDSRHYCFVVNGSNIKPYNQRKEKRKRSEL 274
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 199 TGIVAYNQYQSKAKMKEIMQLKNYMANPITPVEQLEQNKDDMKTQMEL 342
+G AYN +K+K M N M P TP + +NK+ + ++ L
Sbjct: 705 SGASAYNSPIQTSKLKN-MNFFNTMHMPSTPAHKRPENKNQIDVEINL 751
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 509 TDIFTPAFSKTLPSCRTQVIP 447
TD+F PAF KTL + V P
Sbjct: 202 TDLFPPAFCKTLSKLHSHVTP 222
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 214 KLQYLCQGQQHSIILMVDF*SSYKF 140
K +Y+C QQ S+ DF SS KF
Sbjct: 47 KTRYICVRQQDSLYKQADFQSSAKF 71
>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 244 KEIMQLKNYMANPITPVEQLEQNKDDMKTQMEL 342
KE+ + + + N VE++ N++DMK +EL
Sbjct: 110 KEVRESQQSLENEFDKVEKIIVNEEDMKKTLEL 142
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 619 HPRNPMVPTIHFNYRYFEVQDKNGVQWW 702
+ N + P IH+ Y D+N QWW
Sbjct: 163 YAENVIRPLIHYKYWPSSEVDENEEQWW 190
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 460 VLQDGRVFEKAGVNISVVSGKLPPAAIQQ--MRSRGKNLQ-NAELPFFAAGVSAVIH 621
VL+DG + SV GKLP IQQ + +G Q E FFAA +++IH
Sbjct: 289 VLKDGSTLSAKKIVSSVDEGKLPHQQIQQRYLLVKGDCQQLFQEDGFFAALDASLIH 345
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 244 KEIMQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEAKFTVD 420
+E++QL+ + + L Q +T E + I EF LEKE+ EAK +D
Sbjct: 363 QELVQLERHYTHFAKAYTALLQEIHRRQTY-ENCVRSIVDEFVGRLEKEQQAEAKCRID 420
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +1
Query: 226 QSKAKMKEIMQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEA 405
++K K+++ + + A +LE+ + K Q R+ +F + +KE ++ A
Sbjct: 514 EAKEKIQKEEEYNKWFARKQQARVELEEQRRKKKEQD-----RLSGKFEKMTQKEREQYA 568
Query: 406 KFTVDRWTRK 435
K +RW +K
Sbjct: 569 KKENERWDKK 578
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 515 ETTDIFTPAFSKTLPSCRTQVIPP 444
E+ D F PAF CRT+++ P
Sbjct: 296 ESLDAFLPAFYDVYFQCRTRLLKP 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,264
Number of Sequences: 5004
Number of extensions: 57498
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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