Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19d21
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1114 + 30995816-30996229,30997054-30997129,30997493-309975... 141 4e-34
08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,887... 31 1.2
11_06_0291 + 22008412-22012284 30 1.5
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 29 2.7
07_01_1086 - 9930311-9931993 29 3.6
12_01_1105 + 11672118-11673245 28 6.2
04_04_0012 + 22145111-22146388 28 6.2
03_05_0106 + 20880069-20881001 28 6.2
09_01_0017 + 383921-384250,384407-384478,385490-385654,385737-38... 28 8.3
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868... 28 8.3
>04_04_1114 +
30995816-30996229,30997054-30997129,30997493-30997587,
30997729-30997812,30998094-30998181,30998485-30998609,
30998687-30998785,31000089-31000190,31001570-31001680
Length = 397
Score = 141 bits (342), Expect = 4e-34
Identities = 71/139 (51%), Positives = 93/139 (66%), Gaps = 12/139 (8%)
Frame = +1
Query: 322 MKTQMELLIMRIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGGITCVLQDGRVFEKAGVN 501
++ + E +I R+Q E C ALE+ + A+F D W+R GGGGI+ VLQDGRVFEKAGVN
Sbjct: 35 VRERFEAMIRRVQGEVCAALEEADGSGARFVEDVWSRPGGGGGISRVLQDGRVFEKAGVN 94
Query: 502 ISVVSGKLPPAAIQQMRSR-GKNLQNAE------LPFFAAGVSAVIHPRNPMVPTIHFNY 660
+SVV G +PP A + + GKN A+ +PFFAAG+S+V+HP+NP PT+HFNY
Sbjct: 95 VSVVYGVMPPDAYRAAKGEAGKNGAAADGPKAGPVPFFAAGISSVLHPKNPFAPTLHFNY 154
Query: 661 RYFEV---QDKNGV--QWW 702
RYFE +D G QWW
Sbjct: 155 RYFETDAPKDAPGAPRQWW 173
>08_01_0901 -
8873905-8874076,8874674-8874786,8875388-8875522,
8875661-8875792,8876136-8876301,8877154-8877248,
8878983-8879104,8879283-8879403,8879556-8879633,
8879730-8879991,8880196-8880366,8881070-8881710
Length = 735
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 391 EDKEAKFTVDRWTRKEGGGG 450
ED+E ++ VDRW +E GGG
Sbjct: 168 EDEEVRWLVDRWLAEEDGGG 187
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 346 IMRIQAEFCRALEKEEDKEAKFTVDRWTRKEGGGG 450
IM+I + + +E +E+ + +V++ T K+GGGG
Sbjct: 374 IMKIARKLKKHMEADEELNEQISVEKRTTKQGGGG 408
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 510 CLRETSSSCHSADAEQRQESTKRRAP 587
CL + ++SC+ +EQR++ST+ R P
Sbjct: 770 CLPDINASCNGLLSEQRRQSTRSRPP 795
>07_01_1086 - 9930311-9931993
Length = 560
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +1
Query: 475 RVFEKAGVNISVVSGKLPPAAI---QQMRSRGKNLQNAELPFFAAGVSAVIH----PRNP 633
RV GV+ GKL P + + +R RG+ ELP AGV V H +
Sbjct: 418 RVTPLRGVHCFHTKGKLAPRFVGPYKIVRRRGEVAYQLELPQSLAGVHNVFHVSQLKKCL 477
Query: 634 MVPTIHFNYRYFEVQD 681
VPT N EVQ+
Sbjct: 478 RVPTEGANLEQIEVQE 493
>12_01_1105 + 11672118-11673245
Length = 375
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 557 EARIYKTQSSRFLQPV*VPSSTQGTPWSPPSTSTID 664
E RI++TQ + P G P+S P+T+T+D
Sbjct: 309 EERIFETQEHITVHPKTCEDHDDGIPYSCPTTNTMD 344
>04_04_0012 + 22145111-22146388
Length = 425
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 583 ALRFVDSCLCSASAEWQLEEVSRRQL--IYSLLLSQRLCRLVE 461
+L++ ++ L ++ + + + R L +Y LL Q LCRL+E
Sbjct: 300 SLKYFETALRDYKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIE 342
>03_05_0106 + 20880069-20881001
Length = 310
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 583 ALRFVDSCLCSASAEWQLEEVSRRQL--IYSLLLSQRLCRLVE 461
+L++ ++ L ++ + + + R L +Y LL Q LCRL+E
Sbjct: 185 SLKYFETALRDYKSQLEEDPIVHRHLSSLYDALLEQNLCRLIE 227
>09_01_0017 +
383921-384250,384407-384478,385490-385654,385737-385784,
385863-385940,386425-386538,386661-386753,387779-387890,
388959-389005,389116-389478
Length = 473
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 157 KNRPLRLYCAAVLGTGIVAYNQYQSKAKMK 246
+ LR++CA VLGT IV +Y +A K
Sbjct: 350 RKHQLRVHCAEVLGTPIVGDYKYGRQAHQK 379
>05_03_0355 -
12885898-12886290,12886351-12886644,12886744-12886871,
12886952-12888482
Length = 781
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 34 RFMIVNDSGIF--FYF*FLEKMSFNILFRSFQTLSYVGTYKKIKNR 165
RF + DSG FY K+ F + Q LS+ G ++++KNR
Sbjct: 282 RFKLKKDSGPSKQFYLGTGHKVQIKFHFGAGQLLSWAGQHERVKNR 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,471,617
Number of Sequences: 37544
Number of extensions: 375612
Number of successful extensions: 1281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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