Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19d21
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 34 0.086
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 30 1.4
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 30 1.4
Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical pr... 29 3.2
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 29 4.3
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp... 29 4.3
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical... 29 4.3
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 29 4.3
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z71262-10|CAA95816.4| 436|Caenorhabditis elegans Hypothetical p... 28 7.4
AY037801-1|AAK94766.1| 436|Caenorhabditis elegans GLY-19 protein. 28 7.4
AY037799-1|AAK94764.1| 352|Caenorhabditis elegans GLY-19 protein. 28 7.4
Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 34.3 bits (75), Expect = 0.086
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 319 DMKTQMELLIMRIQAEFCRALEK-EEDKEAKFTVDRWTRKEGGGGITCVLQDGRVFEKAG 495
D + EL I+ F R + E ++ + D W +K G GG +DG EKA
Sbjct: 70 DNMNESELFGKTIRVNFARPPKATERSQKPVWADDEWLKKYGRGGEAAAEEDGDA-EKAA 128
Query: 496 VNISVVSGKLP 528
+ S S KLP
Sbjct: 129 TSSSSASTKLP 139
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +1
Query: 190 VLGTGIVAYNQYQSKAKMKEI----MQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRI 357
VL I+ + KA KEI + +N + I+ QL ++ + + ELL MR
Sbjct: 106 VLLNEIIVRTSFNEKAMCKEIGHQEAEFENRLKEVISGRAQLTLKSEEAQKKCELL-MRE 164
Query: 358 QAEFCRALEKEEDKEAKFTVDRW 426
+ + + ED KF RW
Sbjct: 165 HSNVYEDVREMEDNIEKFDASRW 187
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +1
Query: 190 VLGTGIVAYNQYQSKAKMKEI----MQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRI 357
VL I+ + KA KEI + +N + I+ QL ++ + + ELL MR
Sbjct: 106 VLLNEIIVRTSFNEKAMCKEIGHQEAEFENRLKEVISGRAQLTLKSEEAQKKCELL-MRE 164
Query: 358 QAEFCRALEKEEDKEAKFTVDRW 426
+ + + ED KF RW
Sbjct: 165 HSNVYEDVREMEDNIEKFDASRW 187
>Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 241 MKEIMQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEAKFTV 417
M + QLK+ +A + LE DD+K Q+ R + LE EE+++ + T+
Sbjct: 335 MSQTAQLKSTIAGQQEHIRSLETTVDDLKQQIASQTERNDVLEFQVLEMEENQKQQDTI 393
>Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical
protein C14H10.2b protein.
Length = 412
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 241 MKEIMQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEAKFTV 417
M + QLK+ +A + LE DD+K Q+ R + LE EE+++ + T+
Sbjct: 1 MSQTAQLKSTIAGQQEHIRSLETTVDDLKQQIASQTERNDVLEFQVLEMEENQKQQDTI 59
>Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 241 MKEIMQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEAKFTV 417
M + QLK+ +A + LE DD+K Q+ R + LE EE+++ + T+
Sbjct: 335 MSQTAQLKSTIAGQQEHIRSLETTVDDLKQQIASQTERNDVLEFQVLEMEENQKQQDTI 393
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 160 NRPLRLYCAAVLGTGIVAYN--QYQSKAKMKEIMQ 258
N PL LYCA +L +V Y +AK K+++Q
Sbjct: 153 NEPLNLYCAIILIAVVVFMGMLSYWQQAKAKKVLQ 187
>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1045
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 160 NRPLRLYCAAVLGTGIVAYN--QYQSKAKMKEIMQ 258
N PL LYCA +L +V Y +AK K+++Q
Sbjct: 153 NEPLNLYCAIILIAVVVFMGMLSYWQQAKAKKVLQ 187
>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
protein Y105E8A.12b protein.
Length = 1045
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 160 NRPLRLYCAAVLGTGIVAYN--QYQSKAKMKEIMQ 258
N PL LYCA +L +V Y +AK K+++Q
Sbjct: 153 NEPLNLYCAIILIAVVVFMGMLSYWQQAKAKKVLQ 187
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 160 NRPLRLYCAAVLGTGIVAYN--QYQSKAKMKEIMQ 258
N PL LYCA +L +V Y +AK K+++Q
Sbjct: 153 NEPLNLYCAIILIAVVVFMGMLSYWQQAKAKKVLQ 187
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 265 NYMANPITPVEQLEQNKDDMKTQMELLIMRIQAEFCRALEKEEDKEAKFTVDRWTRKEG 441
N + + I VEQ +NK D+ +EL++ Q + LE++ + VDR R++G
Sbjct: 96 NSVQDKIDLVEQKPENKKDIVRMLELVVDCHQFDAHPPLEEDGLASSTDKVDRKKRQQG 154
>Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical
protein C08B6.6 protein.
Length = 218
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = +1
Query: 223 YQSKAKMKEIMQLKNY-MANPITPVEQLEQNK-----DDMK-TQMELLIMRIQAEFCRAL 381
Y S +K E + K Y T V LEQ K + MK ELLI RI+ +
Sbjct: 16 YNSTSKTLEDLNSKYYDFQESDTDVNSLEQRKLISFLNFMKDNDRELLISRIR------I 69
Query: 382 EKEEDKEAKFTVDRW 426
++E++ +KF VD W
Sbjct: 70 DEEDNSLSKFLVDAW 84
>Z71262-10|CAA95816.4| 436|Caenorhabditis elegans Hypothetical
protein F22D6.12 protein.
Length = 436
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 541 QQMRSRGKNLQNAELPFFAAGVSAVIHPR 627
QQ R GKN + LP F + +SA+I PR
Sbjct: 240 QQARLTGKNENESPLPLFKSSLSAII-PR 267
>AY037801-1|AAK94766.1| 436|Caenorhabditis elegans GLY-19 protein.
Length = 436
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 541 QQMRSRGKNLQNAELPFFAAGVSAVIHPR 627
QQ R GKN + LP F + +SA+I PR
Sbjct: 240 QQARLTGKNENESPLPLFKSSLSAII-PR 267
>AY037799-1|AAK94764.1| 352|Caenorhabditis elegans GLY-19 protein.
Length = 352
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 541 QQMRSRGKNLQNAELPFFAAGVSAVIHPR 627
QQ R GKN + LP F + +SA+I PR
Sbjct: 156 QQARLTGKNENESPLPLFKSSLSAII-PR 183
>Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical
protein C17E4.2 protein.
Length = 819
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 247 EIMQLKNYMANPITPVEQLEQNKDDMKTQMELLIMRIQ--AEFCRALEKEEDK--EAKFT 414
EI QL+ Y+ N E+++ + +KTQ+E + + K+ D+ E K
Sbjct: 28 EIEQLEQYIRNLQINFEKIQTENEILKTQLEEKETEAEESQRLLDVIHKDRDECIEEKMK 87
Query: 415 VDRWTRKEGGGGITCVLQDGRVFEKAGVNI 504
V R+ R E I V+++ K N+
Sbjct: 88 VSRFYRNE----IKKVIEENEALRKENNNL 113
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 344 SNSICVFISSLFCSNCSTGVIG 279
+NS+C FC NC TG G
Sbjct: 370 ANSVCQDFEGGFCCNCDTGFYG 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,640
Number of Sequences: 27780
Number of extensions: 337401
Number of successful extensions: 1134
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -