Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19d17
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 27 1.4
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 4.3
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 4.3
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 25 4.3
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 25 4.3
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 5.7
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 24 7.6
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 24 10.0
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 24 10.0
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 24 10.0
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 24 10.0
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 179 WKGWPPLSQISQSWAPMIGALP-SVHRVGLWHREN 78
W G P L + WA +GA ++ GLW+ +N
Sbjct: 77 WAGGPILKYLGPRWALALGATGYPIYIGGLWYFDN 111
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 124 PIIGAQLCEICDKGGQPFQAWPTQTHTHNVRGAERQ 231
P +LCEI P + W H + +RG Q
Sbjct: 34 PSDATELCEILVNEQAPREFWTKFAHEYYIRGLREQ 69
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = -1
Query: 203 VWVWVGQAWKGW--PPLSQ 153
+W W+ WK PPLSQ
Sbjct: 687 IWTWISAFWKAKAPPPLSQ 705
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 141 LGPDDWGSAFCPSGWTVASRELCSGEM 61
L P D+ P+ W + SR SGE+
Sbjct: 364 LAPGDYHRFHSPADWVIESRRHFSGEL 390
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 104 RVGLWHRENFVPGRWNSAATLVGSPSVCLSSRAK 3
R+G +HRE+FV G N + T + + + + +
Sbjct: 102 RMGEFHRESFVEGALNLSTTSLDQLKLAIKEKVQ 135
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 24.6 bits (51), Expect = 5.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 137 APMIGALPSVHRVGLWHRE 81
A M+ A+ +VH++G HR+
Sbjct: 267 AEMVAAISAVHKLGYMHRD 285
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 24.2 bits (50), Expect = 7.6
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = -1
Query: 278 VYYLNC*EIKFSKSPFCLSAPLTLWVWVWVGQ-AWKGWPPLSQISQSWAPMIGAL---PS 111
+++L C + S + C + P + ++ A KGW PL+ W+ IG + PS
Sbjct: 108 MFFLIC--VSMSMAEICSAMPTSGGLYYAAAVFAPKGWGPLASWITGWSNYIGNIIGQPS 165
Query: 110 VH 105
V+
Sbjct: 166 VN 167
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 164 PLSQISQSWAPMIGALPSVHRVGL 93
PLS+ SQ W+ ++ A+ ++ VG+
Sbjct: 901 PLSKDSQKWSAILEAVSKLNGVGV 924
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 23.8 bits (49), Expect = 10.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 122 PQSSGPNFVKFATKVANLSKLGPPKPTPTTS 214
P+SS P+F A N + G P P TTS
Sbjct: 491 PKSSLPSFSNSAILGTNDAASGTPVPQDTTS 521
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 168 PTFPSLAHPNP 200
P FPS AHP+P
Sbjct: 14 PVFPSRAHPSP 24
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 116 AEPQSSGPNFVKFATKVANLSKLGPPKPTPTTSEAPK 226
AEP ++ P AT + S + P P PT + K
Sbjct: 358 AEPLATPPRHPLNATNGTSQSNISTPLPEPTPGQPRK 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,537
Number of Sequences: 5004
Number of extensions: 37792
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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