Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19d08
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0002 + 10059518-10059949,10060134-10060202,10060344-100604...    26   5.4  
07_02_0033 + 12075384-12075869                                         26   7.2  
06_03_1080 + 27436389-27436742,27437573-27437804,27437911-274381...    25   9.5  

>01_02_0002 +
           10059518-10059949,10060134-10060202,10060344-10060426,
           10061842-10061894,10062056-10062177,10062354-10062387,
           10062472-10062632,10062879-10062956,10063038-10063178
          Length = 390

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +3

Query: 150 WREIYRGKGIFNILKN 197
           WRE++RG  I+++++N
Sbjct: 13  WREMFRGADIYDVIRN 28


>07_02_0033 + 12075384-12075869
          Length = 161

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 39  LRSFLCLI*FIPNLSTYGLNYIYLNFRQILFKNIDIGW 152
           LR   CL  F P      L    L+F+QI  ++ID+ W
Sbjct: 107 LRDRFCLA-FFPVTRITALRIEILSFKQIKNESIDVAW 143


>06_03_1080 +
           27436389-27436742,27437573-27437804,27437911-27438159,
           27438467-27438517,27438676-27438936,27439019-27439071,
           27439201-27439315,27441666-27441920,27442423-27443480
          Length = 875

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 126 LFKNIDIGWREIYRGKGIFNILK-NYSVFYNI--YQINNF 236
           LF  I I W     G GI+NI+K N SV   +  Y I NF
Sbjct: 323 LFAPILISWLTCIGGIGIYNIIKWNPSVIRALSPYYIYNF 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,402
Number of Sequences: 37544
Number of extensions: 30753
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)