Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19d07
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 73 6e-14
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 56 5e-09
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 46 4e-06
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 34 0.024
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 29 0.68
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 29 0.90
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 29 0.90
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 29 0.90
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 28 1.2
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 27 2.1
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 27 2.1
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 27 2.7
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 3.6
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 26 4.8
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 4.8
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 4.8
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 26 6.3
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 8.4
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 72.5 bits (170), Expect = 6e-14
Identities = 57/173 (32%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Frame = +1
Query: 241 WFPGHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPHILVLNKRDLV 420
W+PGHMNK LK+++ S D +EV DARIP T RN + L K I+V NK DL
Sbjct: 17 WYPGHMNKTLKRLKNLTSSNDIFVEVRDARIPLTSRNYVMEDFL-NKKNRIIVYNKCDLA 75
Query: 421 ITSLIP------RIKDQLKAEQNVD---NVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRY 573
T RI++ + QNV+ T K F + P + R
Sbjct: 76 DTFHTKAKVSKHRIQNLAQQFQNVECWFKETSTPEKSAFITPYVSKAPYFAKELLRLIRT 135
Query: 574 ---NRSEELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSL 723
S V +G+PN GKSS++N LR+ + VG GVT+ +
Sbjct: 136 LVDQASANGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRI 188
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 56.0 bits (129), Expect = 5e-09
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 13/164 (7%)
Frame = +1
Query: 271 KQMQRKLKSVDCVIEVHDARIPFTGRNP-IFTSTLTGA---KPHILVLNKRDLVITSLIP 438
K+ ++ +++ D ++ V DAR P R+ + L + K I V+NK DLV + ++
Sbjct: 154 KEFKKVVEASDVILYVLDARDPEGTRSKDVERQVLASSAEEKRLIFVINKIDLVPSEVLN 213
Query: 439 RIKDQLK------AEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYN 600
+ L+ ++ +N K Q TI +L+K+ Y+ ++L+ +
Sbjct: 214 KWVTYLRNFFPTIPMRSASGSGNSNLKHQSASASSTIS----NLLKSLKSYSAKKKLKSS 269
Query: 601 --VMIIGVPNVGKSSMINMLRSRNISGRHV-LPVGAVAGVTRSL 723
V +IG PNVGKSS+IN L +R+ +GR P G VAG+T SL
Sbjct: 270 LTVGVIGYPNVGKSSVINALVNRSANGRSAPCPAGNVAGMTTSL 313
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 46.4 bits (105), Expect = 4e-06
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Frame = +1
Query: 250 GHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLV 420
G + ++ + + S D +I+V DAR P R L H ILVLNK DLV
Sbjct: 201 GQSKRIWNELYKVIDSSDVLIQVLDARDPVGTRCGTVERYLRNEASHKHMILVLNKVDLV 260
Query: 421 ITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYN 600
TS + ++ A++ + + F +G ++ +++ + S++ + +
Sbjct: 261 PTS-VAAAWVKILAKEYPTIAFHASINNSFGKGS------LIQILRQFASLH-SDKKQIS 312
Query: 601 VMIIGVPNVGKSSMINMLRSRNISGRHVLP 690
V +IG PN GKSS+IN LR + + +P
Sbjct: 313 VGLIGFPNAGKSSIINTLRKKKVCNVAPIP 342
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 33.9 bits (74), Expect = 0.024
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 598 NVMIIGVPNVGKSSMINMLRSRNIS 672
NV I+G N GKSS+IN+L +R IS
Sbjct: 241 NVAILGPSNAGKSSLINLLANRRIS 265
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/82 (20%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = +1
Query: 442 IKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLM---VDLIKNSNRYNRS---EELEYNV 603
++ + +N + + NS+ +F + I+ + V N+++R + +NV
Sbjct: 39 VEAAISENKNEEKPIQDNSEQEFNPHVSIIQRQLNGYVGFASLPNQWHRRCVRQGFNFNV 98
Query: 604 MIIGVPNVGKSSMINMLRSRNI 669
+++G GKS+++N L +R++
Sbjct: 99 LVLGESGSGKSTLVNTLLNRDV 120
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 28.7 bits (61), Expect = 0.90
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 443 IRGINDVMTKSLLLRTNM*GLAPVNVLVKIGFRPVKGILASC 318
+RG+ ++ + L + NM AP N+ +GF G+L C
Sbjct: 191 VRGLWNLNYRELNTKINMENKAPSNMRWSLGFETYYGVLTKC 232
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.90
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +1
Query: 388 HILVLNKRDLVITSLIPRIKDQL--KAEQNVDNVVFTNSKDQFCRGLKTIKP-LMVDLIK 558
H+ N + + L +K L K + D V T +K R + + P +DL+
Sbjct: 271 HLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVNKAFRDRLTQILTPSTSLDLLH 330
Query: 559 NSNRYNRSEELEYNVMIIGVPNVGKSSMI 645
+ ++E Y + +IGV VGKS+ +
Sbjct: 331 SIRSVRKNENRPYTISLIGVNGVGKSTTL 359
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 28.7 bits (61), Expect = 0.90
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 592 EYNVMIIGVPNVGKSSMINMLRSRNI 669
++NVM++G GKS++IN L S ++
Sbjct: 32 QFNVMVVGPSGSGKSTLINTLFSAHL 57
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 607 IIGVPNVGKSSMINMLRSRNISGRHVLPVGAV 702
I+G+PN+GKS++ +L N+ P +
Sbjct: 50 IVGMPNIGKSTLFQILTKTNLGNPANYPFATI 81
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 385 PHILVLNKRDLVITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNS 564
P +LV NK DL ++ R + + A+ V T++K + ++ L++
Sbjct: 115 PVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRL-----NVEEAFYSLVRTI 169
Query: 565 NRYNRSEE 588
RYN+SEE
Sbjct: 170 RRYNKSEE 177
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 607 IIGVPNVGKSSMINML 654
++G PNVGKSS IN L
Sbjct: 306 LVGYPNVGKSSTINAL 321
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 726 HKTPGYTGNSTDRQHMPSTNIPGSQHVDHRG 634
H+TPG TG +T PS +PG + H G
Sbjct: 184 HRTPGSTGQNTT----PSRVLPGRKMAGHMG 210
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +1
Query: 361 TSTLTGAKPHILVLNKRDLVITSLIPRIKDQLKAEQN 471
+ ++ P ++ + K+D+V+T L PR+ ++ N
Sbjct: 305 SGSIASISPSVIAIAKQDIVLTYLYPRLDVEVSRHLN 341
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 601 VMIIGVPNVGKSSMINMLRSRNISGRHVLPVGA 699
V+I+G VGK+S++N +R S + +GA
Sbjct: 11 VIILGESGVGKTSIMNQYVNRKFSKDYKATIGA 43
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 636 GFTDIWNSNYHNIIL*FLASVIPIRIFY 553
G +I N++Y N+++ LA V P R ++
Sbjct: 179 GMNNIKNNDYFNVVIHMLAHVKPFRNYF 206
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 565 NRYNRSEELEYNVMIIGVPNVGKSSMINMLR 657
N + S E V I+G+ GKS+++ +LR
Sbjct: 1119 NNVSLSIEAREKVAIVGISGSGKSTLVELLR 1149
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +1
Query: 607 IIGVPNVGKSSMINML 654
++G+PN GKS+++N L
Sbjct: 241 LVGLPNAGKSTLLNCL 256
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 601 VMIIGVPNVGKSSMIN 648
+++ G PNVGKSS +N
Sbjct: 171 LLVCGYPNVGKSSFMN 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,877
Number of Sequences: 5004
Number of extensions: 54125
Number of successful extensions: 145
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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