Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19d07
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 75 6e-14
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 75 8e-14
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 58 9e-09
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 51 1e-06
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 38 0.008
04_03_0687 + 18713603-18713962,18715318-18715539,18717068-187172... 32 0.41
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 31 0.71
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 31 1.2
07_01_0075 - 558829-560859 30 1.6
06_01_0668 - 4882174-4884204 30 1.6
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 29 2.9
03_03_0224 + 15580944-15581036,15581630-15581770,15582385-155824... 29 3.8
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 29 3.8
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 29 5.0
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003... 29 5.0
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 28 6.6
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 28 6.6
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 6.6
04_01_0282 - 3764110-3764666,3765117-3765180 28 8.7
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 28 8.7
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 74.9 bits (176), Expect = 6e-14
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 15/178 (8%)
Frame = +1
Query: 235 LRWFPGHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPHILVLNKRD 414
+ WFPGHM + ++ +LK D V+EV DARIP + N L +K IL LNK+D
Sbjct: 10 VNWFPGHMAAASRAIRDRLKLADLVLEVRDARIPLSSANEDLQPVL-ASKRRILALNKKD 68
Query: 415 LVITSLIPRIK---DQLKAEQNVDNVVFTNSKDQFCRG-LKTIKPL----MVDLIKNSNR 570
L +++ R + K + N T+S QF G L + L ++ L++ +
Sbjct: 69 LANPNIMNRWLHHFESCKQDCISINAHSTSSVSQFSWGHLVEVYYLYFYKLLGLVEFKLK 128
Query: 571 YNRSEELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVL-------PVGAVAGVTRSL 723
S+E VM++GVPNVGKS++IN + R ++ R + VG + GVT+ +
Sbjct: 129 EAISKEPTLLVMVVGVPNVGKSALINSIH-RIVTSRFPVQDKNKRATVGPLPGVTQDI 185
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 74.5 bits (175), Expect = 8e-14
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 3/166 (1%)
Frame = +1
Query: 235 LRWFPGHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPHILVLNKRD 414
++W+PGH+ K K+++ +LK +D VIEV DARIP +P + L G + I+V+N+ D
Sbjct: 283 VQWYPGHIAKTEKELKEQLKLMDVVIEVRDARIPLATSHPKMDAWL-GNRKRIIVMNRED 341
Query: 415 LVITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEEL- 591
+V ++ A Q VV++N Q G + + L N R + L
Sbjct: 342 MV-SNEDRNAWASYFANQGT-KVVYSNG--QLGMGTMKLGRMAKSLASTVNTKRREKGLL 397
Query: 592 --EYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSL 723
I+G PNVGKSS+IN L R + P GVTR L
Sbjct: 398 PRAVRAGIVGYPNVGKSSLINRLLK-----RRMCPAAPRPGVTREL 438
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 57.6 bits (133), Expect = 9e-09
Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 21/172 (12%)
Frame = +1
Query: 271 KQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLVITSLIPR 441
K++ + +++ D ++EV DAR P R + A P +L+LNK DLV + +
Sbjct: 143 KELVKVIEASDVILEVLDARDPLGTRCIDMEKMVRKADPSKRIVLLLNKIDLVPKESVEK 202
Query: 442 IKDQLKAEQNVDNVVFT-NSKDQFCR-GLKTIK-------PLMVD------LIKNSNRYN 576
L+ E + V F N+++Q + G K+ K P D LIK Y+
Sbjct: 203 WLTYLREE--MPTVAFKCNTQEQRTKLGWKSSKIDKSSNIPQSSDCLGAENLIKLLKNYS 260
Query: 577 RSEELEY--NVMIIGVPNVGKSSMINML-RSRNISGRHVLPVGAVAGVTRSL 723
RS EL+ V I+G+PNVGKSS+IN L RSR V+ VG+ GVTRS+
Sbjct: 261 RSHELKLAITVGIVGLPNVGKSSLINSLKRSR------VVNVGSTPGVTRSM 306
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 50.8 bits (116), Expect = 1e-06
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Frame = +1
Query: 241 WFPGHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGR-NPIFTSTLTGAKPHILVLNKRDL 417
W+ HM + ++ +L VD V+EV DAR+P P+ + + ++VLNK DL
Sbjct: 23 WYGRHMAAADRAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKADL 82
Query: 418 VITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEY 597
S + +K Q + V NS + G+K + + I+ +
Sbjct: 83 ADPSQTEKWMAYMK--QTSCSCVALNSHSR--EGIKELLNAVRAKIREIKL--GESDCTG 136
Query: 598 NVMIIGVPNVGKSSMINML 654
V+++G+PNVGKS+++N +
Sbjct: 137 TVLLVGIPNVGKSAIVNAM 155
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 37.9 bits (84), Expect = 0.008
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Frame = +1
Query: 274 QMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLVITSLIPRI 444
++ + + S D V++V DAR P R L H + +LNK DLV
Sbjct: 215 ELYKVIDSSDVVVQVLDARDPMGTRCYHLEKHLKENAKHKHLVFLLNKCDLVPAWAT--- 271
Query: 445 KDQLKA-EQNVDNVVFTNS-KDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYNVMIIGV 618
K L+ ++ + F S F +G ++ +++ R +S++ +V +G
Sbjct: 272 KGWLRTLSKDYPTLAFHASINSSFGKGS------LLSVLRQFARL-KSDKQAISVGFVGY 324
Query: 619 PNVGKSSMINMLRSRNI 669
PNVGKSS+IN LRS+++
Sbjct: 325 PNVGKSSVINTLRSKSV 341
>04_03_0687 +
18713603-18713962,18715318-18715539,18717068-18717256,
18717419-18717612,18718193-18718328
Length = 366
Score = 32.3 bits (70), Expect = 0.41
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 535 PLMVDLIKNSNRYNRSEELE-YNVMIIGVPNVGKSSMINMLRS-RNIS 672
PL + + + S E LE +I+G VGKSS+IN LRS +NIS
Sbjct: 136 PLFLSVDQKSGLSALEETLEGQTTVIVGPSGVGKSSLINALRSNQNIS 183
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 586 ELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTR 717
+L + I+G PNVGKS+++N L + + VL VG AG+TR
Sbjct: 309 KLPLQLAIVGRPNVGKSTLLNTL----LQEQRVL-VGPEAGLTR 347
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +1
Query: 547 DLIKNSNRYNRSEELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLM 726
D + +N Y++ + V IIG PNVGKSS++N + + S R + V +AG TR ++
Sbjct: 291 DALDTAN-YDKLLQSGLQVAIIGRPNVGKSSLLN---AWSKSERAI--VTEIAGTTRDVV 344
>07_01_0075 - 558829-560859
Length = 676
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 505 QFCRGLKTIKPLMVDLIKNSNRYNRSEELEYN---VMIIGVPNVGKSSMINMLRSRNI 669
+ C +K I P + L + R ++ N ++I G PNVGKSS +N + ++
Sbjct: 136 RMCTVIKRISPSLAYLEQIRQHMARLPSIDPNTRTLLICGYPNVGKSSFMNKITRADV 193
>06_01_0668 - 4882174-4884204
Length = 676
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 505 QFCRGLKTIKPLMVDLIKNSNRYNRSEELEYN---VMIIGVPNVGKSSMINMLRSRNI 669
+ C +K I P + L + R ++ N ++I G PNVGKSS +N + ++
Sbjct: 136 RMCTVIKRISPSLAYLEQIRQHMARLPSIDPNTRTLLICGYPNVGKSSFMNKITRADV 193
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 601 VMIIGVPNVGKSSMINMLRSRNIS 672
V ++G PNVGKS++IN + + +S
Sbjct: 128 VAVLGKPNVGKSTLINQIVGQKLS 151
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +1
Query: 268 LKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAK---PHILVLNKRDLVITSLIP 438
+K ++ + S DCV+ V DA + I + P +LVLNK+DL+ I
Sbjct: 196 MKNVRSAVGSADCVLVVVDACKMPEKIDEILEEGVGNKDTELPVLLVLNKKDLIKPGEIA 255
Query: 439 RIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIK 534
+ + + N D+V+ ++K F G+ IK
Sbjct: 256 KKLEWYQKFTNADDVIPISAK--FGHGVDDIK 285
>03_03_0224 +
15580944-15581036,15581630-15581770,15582385-15582493,
15582598-15582659,15583704-15583807,15584058-15584160
Length = 203
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 592 EYNVMIIGVPNVGKSSMINMLRSRNISGRHVLP 690
E++V+I+GV GK++++ ++S + G + P
Sbjct: 17 EFHVLILGVDKAGKTTLLEKIKSIYLKGEGLTP 49
>03_02_0473 +
8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 430 LIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYNVM 606
++PRI DQL AE D+V F R L +K L NS + E+ + ++
Sbjct: 183 VVPRIVDQLSAESTSDDVEF------HARRLAALKALTSSSTSNSEMLEKLYEIVFGIL 235
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +1
Query: 556 KNSNRYNRSEELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTR 717
K S + + L V IIG PNVGKS++ N L + G + V GVTR
Sbjct: 148 KTSASKHIPDNLLPRVAIIGRPNVGKSALFNRL----VGGNRAIVVDE-PGVTR 196
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 601 VMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTR 717
+ I+G PNVGKSS++N L G V V+G TR
Sbjct: 376 IAIVGRPNVGKSSILNAL-----VGEDRTIVSPVSGTTR 409
>07_03_0759 -
21299502-21299807,21299889-21300039,21300151-21300388,
21300729-21300939,21301018-21301133,21301388-21301519,
21302179-21303073
Length = 682
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +1
Query: 289 LKSVDCVIEVHDARIPFTGRNPIF----TSTLTGAKPHILVLNKRDLVITSLIPR 441
+ SV+ ++ + R+P R P F S + PH ++ D+ IT L+PR
Sbjct: 629 ISSVNIMLSSNTVRLPSLSR-PAFCIQDVSASDSSNPHSTAVSSNDMSITDLVPR 682
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 583 EELEYNVMIIGVPNVGKSSMINML 654
+++ +V I+G PN GKSS+ N +
Sbjct: 145 DQMSLSVGIVGAPNAGKSSLTNTM 168
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 598 NVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLM 726
NV +IG N GKS++IN + L AV G T ++
Sbjct: 409 NVWVIGAQNAGKSTLINAFAKKQGVKITRLTEAAVPGTTLGIL 451
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 714 GYTGNSTDRQHMPSTNIPGSQHVD 643
G+T T RQ P+T+ P S HVD
Sbjct: 1559 GHTRRDTFRQRKPNTSRPPSMHVD 1582
>04_01_0282 - 3764110-3764666,3765117-3765180
Length = 206
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 213 PLCEQRPAPLVPWSYEQRSK 272
PL RPAPL+PW +R++
Sbjct: 102 PLLLPRPAPLLPWPVRRRAR 121
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 601 VMIIGVPNVGKSSMINMLRSRNISG 675
V +G PNVGKSS IN L + +G
Sbjct: 333 VGFVGYPNVGKSSTINALVGQKRTG 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,254,246
Number of Sequences: 37544
Number of extensions: 329917
Number of successful extensions: 803
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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