Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19d07
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 138 4e-33
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical ... 51 7e-07
AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical ... 51 7e-07
AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical ... 51 7e-07
U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical p... 34 0.12
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 33 0.28
Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 30 1.9
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 30 1.9
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 29 2.6
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 29 2.6
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 29 2.6
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 29 3.4
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z70210-5|CAA94155.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical pr... 28 5.9
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 138 bits (334), Expect = 4e-33
Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Frame = +1
Query: 253 HMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPHILVLNKRDLVITSL 432
HM+ LK+M+ KL+SVD +IEVHDARIP TGRN F L +PHILVLNK DL+
Sbjct: 2 HMSVQLKKMEAKLRSVDLIIEVHDARIPITGRNQQFFRHLYAIRPHILVLNKCDLIDMKK 61
Query: 433 IPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEYNVMII 612
+ E+ V V+FT+ K + R L +K M+D ++N+ R+NR+ + EY M++
Sbjct: 62 YKHQIEDYYYERGVQKVLFTDCKKRLPRALNDVKLSMLDALENTPRFNRTVKTEYQAMVV 121
Query: 613 GVPNVGKSSMINMLRSRNIS-GRHVLPVGAVAGVT 714
G+PNVGKSS+IN +R+ + R + GA GVT
Sbjct: 122 GIPNVGKSSLINAIRTHTLGIKRKAVEAGARPGVT 156
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 53.2 bits (122), Expect = 2e-07
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Frame = +1
Query: 274 QMQRKLKSVDCVIEVHDARIPFTGRNP-IFTSTLTGAKPHILVLNKRDLV---------- 420
++++ ++ D +I+V DAR P R+ + L G K +L+LNK DLV
Sbjct: 140 EVRKTVEIADVIIQVLDARDPLGSRSKSVEDQVLKGGKRLVLLLNKIDLVPRENVQKWLE 199
Query: 421 -ITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLI-KNSNRYNRSEELE 594
+ P I + ++ N+ NS +T K + D++ K Y R+++++
Sbjct: 200 YLRGQFPTIAFKASTQEQKSNIGRFNSA--ILNNTETSKCVGADIVMKILANYCRNKDIK 257
Query: 595 YNVMI--IGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSL 723
++ + +G PNVGKSS+IN L+ R VG + G+T+ +
Sbjct: 258 TSIRVGVVGFPNVGKSSVINSLKRRKACN-----VGNLPGITKEI 297
>AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical
protein T19A6.2c protein.
Length = 610
Score = 51.2 bits (117), Expect = 7e-07
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Frame = +1
Query: 250 GHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLV 420
G N+ ++ + + S D V++V DAR P R L KPH + V+NK DLV
Sbjct: 216 GQSNRVWGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLV 275
Query: 421 ITSLIPRIKDQLKAEQNVDNVVFTNS-KDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEY 597
T + + +L E + + F S + F +G +++L++ + + + +
Sbjct: 276 PTWVTRKWIGELSKE--MPTIAFHASINNSFGKGA------VINLLRQFAKLH-PDRPQI 326
Query: 598 NVMIIGVPNVGKSSMINMLRSRNI 669
+V IG PNVGKSS++N LR + +
Sbjct: 327 SVGFIGYPNVGKSSLVNTLRKKKV 350
>AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical
protein T19A6.2b protein.
Length = 592
Score = 51.2 bits (117), Expect = 7e-07
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Frame = +1
Query: 250 GHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLV 420
G N+ ++ + + S D V++V DAR P R L KPH + V+NK DLV
Sbjct: 157 GQSNRVWGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLV 216
Query: 421 ITSLIPRIKDQLKAEQNVDNVVFTNS-KDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEY 597
T + + +L E + + F S + F +G +++L++ + + + +
Sbjct: 217 PTWVTRKWIGELSKE--MPTIAFHASINNSFGKGA------VINLLRQFAKLH-PDRPQI 267
Query: 598 NVMIIGVPNVGKSSMINMLRSRNI 669
+V IG PNVGKSS++N LR + +
Sbjct: 268 SVGFIGYPNVGKSSLVNTLRKKKV 291
>AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical
protein T19A6.2a protein.
Length = 651
Score = 51.2 bits (117), Expect = 7e-07
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Frame = +1
Query: 250 GHMNKGLKQMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPH---ILVLNKRDLV 420
G N+ ++ + + S D V++V DAR P R L KPH + V+NK DLV
Sbjct: 216 GQSNRVWGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLV 275
Query: 421 ITSLIPRIKDQLKAEQNVDNVVFTNS-KDQFCRGLKTIKPLMVDLIKNSNRYNRSEELEY 597
T + + +L E + + F S + F +G +++L++ + + + +
Sbjct: 276 PTWVTRKWIGELSKE--MPTIAFHASINNSFGKGA------VINLLRQFAKLH-PDRPQI 326
Query: 598 NVMIIGVPNVGKSSMINMLRSRNI 669
+V IG PNVGKSS++N LR + +
Sbjct: 327 SVGFIGYPNVGKSSLVNTLRKKKV 350
>U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical
protein T26A5.1 protein.
Length = 613
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1
Query: 550 LIKNSNRYNRSEELEYNVMIIGVPNVGKSSMINMLRSRNISG 675
L+KN + Y +S EL + ++G GK++++NML RN+ G
Sbjct: 50 LLKNVSGYAKSGEL---LALMGASGAGKTTLLNMLMCRNLKG 88
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 274 QMQRKLKSVDCVIEVHDARIPFTGRNPIFTSTLTGAKPHILVLNKR--DLVITSLIPRIK 447
++ +KLK +I H A P + + + ST+ K I +LNKR D + + K
Sbjct: 463 ELVQKLKEAQTIIAQHVAENPRSEEDRNYESTIAQLKDEIQILNKRLEDEALAQQQQKPK 522
Query: 448 DQLKAE 465
D++ AE
Sbjct: 523 DEIVAE 528
>Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical
protein C25D7.6 protein.
Length = 812
Score = 31.1 bits (67), Expect = 0.84
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Frame = +1
Query: 388 HILVLNKRDLVITSLIPR-IKD--QLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIK 558
HI +L+K VI + P+ +KD ++ +N ++ + C +T K L+ L+
Sbjct: 269 HIQMLSKE--VIPNFEPQDVKDVRKISKSRNPFELLARSLAPSICGHEETKKALLCLLLG 326
Query: 559 NSNRY-NRSEEL--EYNVMIIGVPNVGKSSMINML-----RSRNISGRHVLPVGAVAGVT 714
+ N L + NV++IG P+V KS ++ + R+ +GR VG A VT
Sbjct: 327 GMEKILNNGSRLRGDINVLLIGDPSVAKSQLLRYVLRMAPRAITTTGRGSSGVGLTAAVT 386
>Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical
protein C38D4.8 protein.
Length = 190
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/38 (28%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 592 EYNVMIIGVPNVGKSSMINMLRSRNISGRHVLP-VGAV 702
+ N++++G+ N GK++++N L++ + ++P VG V
Sbjct: 17 DVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHV 54
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 580 SEELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVG 696
++++ Y V++IG P VGK+S+I S + +G
Sbjct: 7 NDKISYKVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIG 45
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 580 SEELEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVG 696
++++ Y V++IG P VGK+S+I S + +G
Sbjct: 7 NDKISYKVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIG 45
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Frame = +1
Query: 271 KQMQRKLKSVDCVIEVHDARIPFTGRNPI---FTSTLTGAKPHILVLNKRDLVITSLIPR 441
+++ R ++ D ++++ DAR P R+ + + AK +L++NK DL+
Sbjct: 3 RELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQAS 62
Query: 442 IKDQLKAEQ-------NVDNV--------VFTNSKDQFCRGLKTIKPLMVDLIKNSNRYN 576
++ + E +D V V T++ T K ++ K +
Sbjct: 63 WREYFEKENIKVIFWSAIDEVLDPIDEDAVETSNPSTSTHMFVTNKDELIAKFKELGHVS 122
Query: 577 RSEELE-YNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTR 717
+ V ++G PNVGKSS IN L +G + V A G TR
Sbjct: 123 DEPSAKPVMVGMVGYPNVGKSSTINKL-----AGGKKVSVSATPGKTR 165
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Frame = +1
Query: 271 KQMQRKLKSVDCVIEVHDARIPFTGRNPI---FTSTLTGAKPHILVLNKRDLVITSLIPR 441
+++ R ++ D ++++ DAR P R+ + + AK +L++NK DL+
Sbjct: 3 RELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQAS 62
Query: 442 IKDQLKAEQ-------NVDNV--------VFTNSKDQFCRGLKTIKPLMVDLIKNSNRYN 576
++ + E +D V V T++ T K ++ K +
Sbjct: 63 WREYFEKENIKVIFWSAIDEVLDPIDEDAVETSNPSTSTHMFVTNKDELIAKFKELGHVS 122
Query: 577 RSEELE-YNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTR 717
+ V ++G PNVGKSS IN L +G + V A G TR
Sbjct: 123 DEPSAKPVMVGMVGYPNVGKSSTINKL-----AGGKKVSVSATPGKTR 165
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 29.5 bits (63), Expect = 2.6
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Frame = +1
Query: 271 KQMQRKLKSVDCVIEVHDARIPFTGRNPI---FTSTLTGAKPHILVLNKRDLVITSLIPR 441
+++ R ++ D ++++ DAR P R+ + + AK +L++NK DL+
Sbjct: 172 RELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQAS 231
Query: 442 IKDQLKAEQ-------NVDNV--------VFTNSKDQFCRGLKTIKPLMVDLIKNSNRYN 576
++ + E +D V V T++ T K ++ K +
Sbjct: 232 WREYFEKENIKVIFWSAIDEVLDPIDEDAVETSNPSTSTHMFVTNKDELIAKFKELGHVS 291
Query: 577 RSEELE-YNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTR 717
+ V ++G PNVGKSS IN L +G + V A G TR
Sbjct: 292 DEPSAKPVMVGMVGYPNVGKSSTINKL-----AGGKKVSVSATPGKTR 334
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 29.1 bits (62), Expect = 3.4
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Frame = +1
Query: 379 AKPHILVLNKRDLVITSLIPRIKDQLKAEQNVDNVVFTNSKDQFCRGLKTIKPLMVDLIK 558
A+ I L + L S R ++L+ E V S D+ LK +K ++D+
Sbjct: 209 AEERIQKLQEEMLKTQSQYQRELERLEKENKVLKQRLLLSDDKAAIRLKRLKRSLIDMYS 268
Query: 559 N--------SNRYNRSEELEYNVMIIGVPNVGKSSMINMLRSRNISGR 678
+ YN S+ L V+++G + GK+S++ M+ I R
Sbjct: 269 EVLDLLNEYDSSYNTSDNLP-RVVVVGDQSAGKTSVLEMVAQARIFPR 315
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 275 CFRPLFI*PGNQRSRSLLT*GHCCRNLCRAPSNLADI-VDCLC 150
CF + I QRS L C NLC+ P+ A++ C C
Sbjct: 137 CFNSVNIGDRCQRSEQCLGGSQCQNNLCQCPNGFANVNQKCAC 179
>Z83217-3|CAB05682.3| 610|Caenorhabditis elegans Hypothetical
protein C10C6.5 protein.
Length = 610
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 607 IIGVPNVGKSSMINMLRSRNISG 675
++G GK++++NML SRN+ G
Sbjct: 66 LMGASGAGKTTLLNMLLSRNLRG 88
>Z70210-5|CAA94155.1| 312|Caenorhabditis elegans Hypothetical
protein K08H2.5 protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 589 LEYNVMIIGVPNVGKSSMINMLRSRNISGRHVLPVGAVAGVTRSLMM 729
+ +NVM+ GVPN+ M ISG L +G+V+ V M+
Sbjct: 203 VSWNVMMGGVPNLKDDFSSLMFLGLKISGISSLEIGSVSEVRHQKMI 249
>Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical
protein W03C9.3 protein.
Length = 209
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 601 VMIIGVPNVGKSSMINMLRSRNISGRHVLPVGA 699
V+I+G VGK+S++N +R S ++ +GA
Sbjct: 12 VIILGDSGVGKTSLMNQYVNRRFSNQYKATIGA 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,434,839
Number of Sequences: 27780
Number of extensions: 315811
Number of successful extensions: 807
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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