Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19d05
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   3.9  
SPAC26A3.14c ||SPAC23A6.14c|DUF1748 family protein|Schizosacchar...    27   3.9  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    27   3.9  
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha...    26   6.8  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    25   9.0  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 363 EAFDQMFKNHCAVQSRRPSKLVDFMK 440
           E  D++F+N+   Q+R+ SKL  F+K
Sbjct: 263 EEDDELFQNYVLQQTRKESKLWSFIK 288


>SPAC26A3.14c ||SPAC23A6.14c|DUF1748 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 306 KLHN*ELSTKTEEYIEFV*EAFDQ 377
           K+HN ++ T  E+Y+ F   AFDQ
Sbjct: 36  KIHNEDVKTAVEKYLNFGEWAFDQ 59


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 157 TKSCLNLSNDQL-FSLQDDGGLFISICRGIWRINSS 53
           +K+ LN +  ++ F LQD+G + ISI  G+ R +S+
Sbjct: 161 SKAALNFTMKEISFELQDEGFIVISIHPGMVRTDSA 196


>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 466 DKRLAENIIDLRFQGCHFRIQ 528
           DK   E ++DL+F GC  ++Q
Sbjct: 90  DKLKIEELVDLQFGGCKLQVQ 110


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 157 TKSCLNLSNDQL-FSLQDDGGLFISICRGIWRINSS 53
           +K+ LN +  ++ F LQD+G + ISI  G  R +S+
Sbjct: 161 SKAALNYTMKEISFELQDEGFIVISIHPGAVRTDSA 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,947
Number of Sequences: 5004
Number of extensions: 57707
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)