Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19d05
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.59 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   7.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 487 CSQQVSCHFGLCDSINFMKSTSLDGR 410
           C Q+++ HFG+ D+      T+ +G+
Sbjct: 222 CDQRINYHFGMTDNSRLEPGTNKNGK 247


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 644 VFVNYYSRMIILYFSINLLTFCIS 715
           +F N   R   L++++NL+  C+S
Sbjct: 225 IFFNITLRRKTLFYTVNLIVPCVS 248



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 21  NGVSILQSGLDELLILQIPRQ 83
           NG+  + SGLDE L    PR+
Sbjct: 425 NGLPTVMSGLDESLSDVTPRK 445


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 399 RRNGS*TSDRKLLTQTQYILRSSLKVLNCV 310
           RRN    +D  +  +  + L S LKV+ C+
Sbjct: 97  RRNIFGENDELIAEKVAHALESGLKVIACI 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,528
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)