Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19c19
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    26   6.4  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   8.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 607 PPLLRAPRPGVNRPFPNQNPIKFNLNNVRKAAPLSQSENP 726
           P  + +P   +  P P+  P  FN  NV    P S  E+P
Sbjct: 825 PDEMASPSSSIGHPLPSPPPADFNSLNVDFYEPHSYLESP 864


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 505 VHTFHHGNCYMDDEKHHTSMDYDLEVNQSLFAVEAP 398
           +HT     C+M     HT   Y L + +++  V AP
Sbjct: 340 IHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAP 375


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 406 PLQTMTGLPPNHNPWMYGVFHHPYN 480
           PL  + G+P +   W+Y   H+P+N
Sbjct: 642 PLVKVCGVPRDTLQWLYFSNHYPFN 666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,072
Number of Sequences: 5004
Number of extensions: 63367
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)