Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19c19
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0216 - 15942379-15942852,15942956-15943033                       30   2.2  
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145...    29   2.9  
02_05_0591 - 30183105-30183869                                         28   6.7  
09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718     28   8.9  

>10_08_0216 - 15942379-15942852,15942956-15943033
          Length = 183

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 457 GVFHHPYNNYHGGMYAPYYNQY 522
           G ++ PY  Y+G  Y PYY  Y
Sbjct: 48  GGYYGPYGPYYGPYYGPYYGPY 69


>07_01_1143 -
           10711023-10711884,10713603-10713826,10714253-10714522,
           10715071-10715175
          Length = 486

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +1

Query: 370 LLRMSGNNAKEPPLQTMTGLPPNHNPWMYGVFHHPYNNYHGGMYAPYYNQY 522
           L+     + K  P Q   G   + +   Y     PY  YHGG Y PYY  Y
Sbjct: 379 LVESQEGDGKPGPQQAGQGQASSSSGQSYPEPPPPY--YHGGQYPPYYPPY 427


>02_05_0591 - 30183105-30183869
          Length = 254

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 430 PPNHNPWMYGVFHHPYNNYHGGMYAPYYNQY 522
           PP H P  +  FH     +H G YAP Y+ Y
Sbjct: 177 PPPHPPPHHHAFHQLMPPHH-GQYAPPYDMY 206


>09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718
          Length = 187

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 598 SNPPPLLRAPRPGVNRPFPNQ 660
           +NP PLL +PRP  + P P +
Sbjct: 4   ANPTPLLSSPRPNPSLPLPRR 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,228,318
Number of Sequences: 37544
Number of extensions: 412529
Number of successful extensions: 1089
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)