Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19c19
         (739 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031576-1|AAH31576.1|  368|Homo sapiens F-box protein 28 protein.     30   10.0 
AL390122-1|CAH70934.1|  368|Homo sapiens F-box protein 28 protein.     30   10.0 
AK001628-1|BAA91795.1|  368|Homo sapiens RNA.  protein.                30   10.0 

>BC031576-1|AAH31576.1|  368|Homo sapiens F-box protein 28 protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 583 GMNQASNPPPLLRAPRPGVNR-PFPNQNPIKFNLNNVRKAAPLSQSENPL 729
           G  Q   PPP  + P+PG    P P   P +   NN   A P+   EN L
Sbjct: 27  GSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQNNTLVALPIVAIENIL 76


>AL390122-1|CAH70934.1|  368|Homo sapiens F-box protein 28 protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 583 GMNQASNPPPLLRAPRPGVNR-PFPNQNPIKFNLNNVRKAAPLSQSENPL 729
           G  Q   PPP  + P+PG    P P   P +   NN   A P+   EN L
Sbjct: 27  GSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQNNTLVALPIVAIENIL 76


>AK001628-1|BAA91795.1|  368|Homo sapiens RNA.  protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 583 GMNQASNPPPLLRAPRPGVNR-PFPNQNPIKFNLNNVRKAAPLSQSENPL 729
           G  Q   PPP  + P+PG    P P   P +   NN   A P+   EN L
Sbjct: 27  GSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQNNTLVALPIVAIENIL 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,076,061
Number of Sequences: 237096
Number of extensions: 2325081
Number of successful extensions: 5144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5139
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)