Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19c19
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    25   0.56 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.9  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   6.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   9.1  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 376 RMSGNNAKEPPLQTMTGLPPNHNPWMYGVFHHPYNNYHGGMY 501
           R     ++EP +  ++ L  N+N   Y  +++ YNNY+  +Y
Sbjct: 70  RTERERSREPKI--ISSLSNNYNYSNYNNYNNNYNNYNKKLY 109


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 436 NHNPWMYGVFHHPYNNYHGGMYAPYYNQYF 525
           N+N +    +++ YNNY+   Y  Y   Y+
Sbjct: 325 NNNNYNNNNYNNNYNNYNNNNYNNYKKLYY 354



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 469 HPYNNYHGGMYAPYYNQY 522
           H  NNY+   Y   YN Y
Sbjct: 324 HNNNNYNNNNYNNNYNNY 341


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 493 HHGNCYMDDEKHHTS 449
           HH NC ++ + HHT+
Sbjct: 401 HHPNCKINRKVHHTT 415


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 152 SIYCYLLQYPRILF 193
           SIY  LL+YPR +F
Sbjct: 380 SIYSSLLRYPRSIF 393


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 574 TRCID-DGGYRHYYQHD*NIDYNKVHTFHHGNCYMDDEKHHTS 449
           +RC + D    ++Y H+ N   +   + +  N   +D+ HH+S
Sbjct: 412 SRCANFDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSS 454


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 577 QTRCIDDGGYRHYYQHD*NIDYNKVHTFHHGNCYMDDEK 461
           + R  D   Y  Y + + N +YN  H   H +   +DE+
Sbjct: 167 EPRATDSRHYDRYKEEESNENYNWEHKETHIDWQPEDEE 205


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 481 NYHGGMYAPYYNQY 522
           NY+  +Y  Y+ QY
Sbjct: 716 NYYANLYTKYHGQY 729


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 455 MVFFIIHITITMVEC 499
           ++ FI+ +TIT+V C
Sbjct: 7   LILFILSLTITIVMC 21


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 357 TNYCKVFLQAITFL*EVLIPLIDSCVKILVTATISYKNK 241
           T   KV LQA     E+   L+ +CV++    TI  + +
Sbjct: 8   TKKIKVGLQAHVIPAELTAKLLGNCVRVSPVITIEPRRR 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,356
Number of Sequences: 438
Number of extensions: 5342
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)