Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19c16
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 444 e-126
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 92 7e-20
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 65 9e-12
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 61 1e-10
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 31 0.14
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 28 1.7
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.9
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 6.8
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 26 6.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 9.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.0
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 9.0
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 444 bits (1093), Expect = e-126
Identities = 208/253 (82%), Positives = 236/253 (93%)
Frame = +3
Query: 3 RMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 182
R RV +KAPGI+PR SV EPMQTG+KA+DS+VPIGRGQRELIIGDRQTGKTA+A+DTI+N
Sbjct: 154 RRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILN 213
Query: 183 QQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYL 362
+R+N DE KKLYC+YVA+GQKRSTVAQ+V++L + ++ Y+IIV+ATAS++APLQYL
Sbjct: 214 HKRWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEENDSLKYSIIVAATASESAPLQYL 273
Query: 363 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 542
AP+SGCAMGE+FRDNGKH L++YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL
Sbjct: 274 APFSGCAMGEWFRDNGKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 333
Query: 543 LERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 722
LERAAKMS K GGGSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE+ELF+KGIRPAI
Sbjct: 334 LERAAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAI 393
Query: 723 NVGLSVSRVGSAA 761
NVGLSVSRVGSAA
Sbjct: 394 NVGLSVSRVGSAA 406
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 92.3 bits (219), Expect = 7e-20
Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 6/246 (2%)
Frame = +3
Query: 42 RVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDT-----IINQQRFNKGE 206
R+ E +QTGI ++D L I RGQ+ I +A ++ + + +
Sbjct: 140 RIYPEEMIQTGISSIDGLNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPTKDVHD 199
Query: 207 DEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAM 386
+ ++ A+G T + + G+ + A+D + + P +
Sbjct: 200 GHEDNFSIVFAAMGVNLETARFFQRDFEENGSFERVTLFLNLANDPTIERIITPRLALSA 259
Query: 387 GEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM 563
EF KH L I D++ A A R++S PGR YPG ++ S + ERA ++
Sbjct: 260 SEFLAYQTEKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRV 319
Query: 564 SDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVS 743
+ GS+T +P++ D++ IP IT+GQIF++ +L I P INV S+S
Sbjct: 320 EGR--NGSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLS 377
Query: 744 RVGSAA 761
R+ +A
Sbjct: 378 RLMKSA 383
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 65.3 bits (152), Expect = 9e-12
Identities = 57/248 (22%), Positives = 103/248 (41%), Gaps = 6/248 (2%)
Frame = +3
Query: 24 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 203
AP + + E ++TGIK VD L P RG + + G GKT + I N + + G
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGG 226
Query: 204 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAI-----NYTIIVSATASDAAPLQYLAP 368
Y ++ +G++ + + + + G I + +V ++ +
Sbjct: 227 -------YSVFTGVGERTREGNDLYREMQETGVIKLEGESKAALVFGQMNEPPGARARVA 279
Query: 369 YSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 545
+G + E+FRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 280 LTGLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQ 339
Query: 546 ERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAIN 725
ER GS+T++ + A D++ P + D L + GI PA++
Sbjct: 340 ERITTTKK----GSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVD 395
Query: 726 VGLSVSRV 749
S SR+
Sbjct: 396 PLDSKSRM 403
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 61.3 bits (142), Expect = 1e-10
Identities = 57/250 (22%), Positives = 112/250 (44%), Gaps = 12/250 (4%)
Frame = +3
Query: 33 IIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDE 212
+ ++ +P+ TG + +D+L P +G I G GKT ++ Q +K +
Sbjct: 225 VADNLTANQPLLTGQRVLDALYPCVQGGTTAIPGAFGCGKTVIS-------QSLSKYSNS 277
Query: 213 KKKLYCIYVAIGQKRSTVAQIVK---RLT-DAGA-----INYTIIVSATASDAAPLQYLA 365
+YV G++ + +A+++ LT D + T +V+ T++ + +
Sbjct: 278 D---LIVYVGCGERGNEMAEVLMDFPELTIDINGKPEPIMKRTTLVANTSNMPVAAREAS 334
Query: 366 PYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 545
Y+G + E++RD GK+ ++ D S+ A A R++S L P YP + +
Sbjct: 335 IYTGITLAEYYRDQGKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFY 394
Query: 546 ERAAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRP 716
ERA + + G+++ + + GD S + + + I L+ +L + P
Sbjct: 395 ERAGRARCLGSPDREGTVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFP 454
Query: 717 AINVGLSVSR 746
+IN LS S+
Sbjct: 455 SINTSLSYSK 464
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 447 QAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM 563
Q++A + +LL+ P GRE GD FY + + A++
Sbjct: 651 QSLACAKYKILLKDPKGREVNAGDKFYFNENFVSNLARI 689
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 149 TSLTVTNDQLTLTTANWYQRVNSLDTSLHRLTHRHPGNDT 30
TS ++ L + N QR++SLD+S HPGN T
Sbjct: 154 TSDAYSSSILENSPPNKVQRLSSLDSSQDSFQEEHPGNVT 193
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 438 LSKQAVAYRQMSLLLRRPP 494
LSK+A+ YR+ L L+RPP
Sbjct: 102 LSKRALHYRRKRLALKRPP 120
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 419 GVFAIITEKFTHGTTR-VRSQVLQGSSIGSGGRHDDCVVDGTSISQSLHNLSYS 261
G+ ++ E F H R + S L G G+ +CV+ S S S N++YS
Sbjct: 152 GIAKLLRESFIHAPGRDLDSNFLLGIYNLFLGQAQECVLGHMSFSASDSNMNYS 205
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 398 EKFTHGTTRVRSQVLQGSSIGSGGRHDDCVVDGTS 294
+KFT V S + GS I S DD + DG+S
Sbjct: 80 DKFTFSDAAVNSAGMGGSGIFSHNNADDGLGDGSS 114
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 36 IPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 185
IP V + + V + +G G +I+G R +GK+ L +D I+++
Sbjct: 550 IPLVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVL-VDDILSR 598
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 387 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPG 515
GE + G H ++ DDLS+ AYRQ L+ P + + G
Sbjct: 402 GEIWSALG-HCYLMQDDLSRAYSAYRQALYHLKDPKDPKLWYG 443
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 268 ATVDLFCPMAT*MQYNFFFSSSPLLNLCWLMIVSMAR 158
AT CP++T M + PL LC L+IV+ AR
Sbjct: 583 ATDSTSCPVSTQMDDKWKILFVPLFTLC-LLIVNQAR 618
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,362
Number of Sequences: 5004
Number of extensions: 63291
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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