Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19c16
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 474 e-134
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 474 e-134
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 474 e-134
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 95 5e-20
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 91 8e-19
Z82053-6|CAB04832.1| 106|Caenorhabditis elegans Hypothetical pr... 91 1e-18
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 62 3e-10
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 56 4e-08
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 29 4.8
AF016450-8|AAB65993.1| 578|Caenorhabditis elegans Hypothetical ... 29 4.8
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 28 6.3
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 474 bits (1169), Expect = e-134
Identities = 228/253 (90%), Positives = 245/253 (96%)
Frame = +3
Query: 3 RMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 182
R RV +KAPGIIPR+SVREPM TG+KAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIIN
Sbjct: 127 RSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIIN 186
Query: 183 QQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYL 362
Q+RFN D+KKKL+CIYVA+GQKRSTVAQIVKRLTDAGA++YTI+VSATASDAAPLQ+L
Sbjct: 187 QKRFNDAGDDKKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMDYTIVVSATASDAAPLQFL 246
Query: 363 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 542
APYSGCAMGE FRDNGKHALII+DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL
Sbjct: 247 APYSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 306
Query: 543 LERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 722
LERAAKM++ +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAI
Sbjct: 307 LERAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAI 366
Query: 723 NVGLSVSRVGSAA 761
NVGLSVSRVGSAA
Sbjct: 367 NVGLSVSRVGSAA 379
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 474 bits (1169), Expect = e-134
Identities = 228/253 (90%), Positives = 245/253 (96%)
Frame = +3
Query: 3 RMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 182
R RV +KAPGIIPR+SVREPM TG+KAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIIN
Sbjct: 119 RSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIIN 178
Query: 183 QQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYL 362
Q+RFN D+KKKL+CIYVA+GQKRSTVAQIVKRLTDAGA++YTI+VSATASDAAPLQ+L
Sbjct: 179 QKRFNDAGDDKKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMDYTIVVSATASDAAPLQFL 238
Query: 363 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 542
APYSGCAMGE FRDNGKHALII+DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL
Sbjct: 239 APYSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 298
Query: 543 LERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 722
LERAAKM++ +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAI
Sbjct: 299 LERAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAI 358
Query: 723 NVGLSVSRVGSAA 761
NVGLSVSRVGSAA
Sbjct: 359 NVGLSVSRVGSAA 371
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 474 bits (1169), Expect = e-134
Identities = 228/253 (90%), Positives = 245/253 (96%)
Frame = +3
Query: 3 RMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 182
R RV +KAPGIIPR+SVREPM TG+KAVDSLVPIGRGQRELIIGDRQTGKTA+AIDTIIN
Sbjct: 154 RSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIIN 213
Query: 183 QQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYL 362
Q+RFN D+KKKL+CIYVA+GQKRSTVAQIVKRLTDAGA++YTI+VSATASDAAPLQ+L
Sbjct: 214 QKRFNDAGDDKKKLFCIYVAVGQKRSTVAQIVKRLTDAGAMDYTIVVSATASDAAPLQFL 273
Query: 363 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 542
APYSGCAMGE FRDNGKHALII+DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL
Sbjct: 274 APYSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 333
Query: 543 LERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 722
LERAAKM++ +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAI
Sbjct: 334 LERAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAI 393
Query: 723 NVGLSVSRVGSAA 761
NVGLSVSRVGSAA
Sbjct: 394 NVGLSVSRVGSAA 406
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 95.1 bits (226), Expect = 5e-20
Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 4/244 (1%)
Frame = +3
Query: 42 RVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQ---RFNKGEDE 212
R+ E +QTGI A+D + I RGQ+ I +A I+ Q + +E
Sbjct: 157 RIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ-IVRQGGLVQLPGRNNE 215
Query: 213 KKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGE 392
++ A+G T + + G+++ + A+D + + P E
Sbjct: 216 TVNFAIVFAAMGVNMETARFFKQDFEECGSMDNVCLFLNLANDPTIERIITPRIALTAAE 275
Query: 393 FFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSD 569
FF + GKH L++ D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 276 FFAYHCGKHVLVVLTDMSSYAEALREISAAREEVPGRRGFPGYMYTDLATIYERAGRVKG 335
Query: 570 KMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRV 749
+ GS+T +P++ D++ IP IT+GQI+++ +L + I P I+V S+SR+
Sbjct: 336 R--EGSITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRL 393
Query: 750 GSAA 761
+A
Sbjct: 394 MKSA 397
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 91.1 bits (216), Expect = 8e-19
Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 4/244 (1%)
Frame = +3
Query: 42 RVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGED---E 212
R+ E +QTGI A+D + I RGQ+ I +A I+ Q + D E
Sbjct: 145 RIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIAAQ-IVRQGGLVQLPDRPHE 203
Query: 213 KKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGE 392
+ ++ A+G T + + G++ + A+D + + P E
Sbjct: 204 QTNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRIALTSAE 263
Query: 393 FFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSD 569
F KH L++ D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 264 FLAYQCKKHVLVVLTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEG 323
Query: 570 KMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRV 749
+ GS+T +P++ D++ IP IT+GQI+++ +L + I P INV S+SR+
Sbjct: 324 R--DGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRL 381
Query: 750 GSAA 761
+A
Sbjct: 382 MKSA 385
>Z82053-6|CAB04832.1| 106|Caenorhabditis elegans Hypothetical
protein T26E3.7 protein.
Length = 106
Score = 90.6 bits (215), Expect = 1e-18
Identities = 40/50 (80%), Positives = 48/50 (96%)
Frame = +3
Query: 303 INYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 452
++YTI+VSATASDAAPL++LAPYSGCA+GE F DNGKHALII+DDLSK+A
Sbjct: 1 MDYTIVVSATASDAAPLKFLAPYSGCAIGEHFLDNGKHALIIFDDLSKKA 50
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 62.5 bits (145), Expect = 3e-10
Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 7/250 (2%)
Frame = +3
Query: 21 KAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNK 200
+AP + +E + TGIK VD L P +G + + G GKT L ++ I N + +
Sbjct: 178 EAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 237
Query: 201 GEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINY------TIIVSATASDAAPLQYL 362
G Y ++ +G++ + + + G I+ +V ++ +
Sbjct: 238 G-------YSVFAGVGERTREGNDLYHEMIEGGVIDLKGKNSKVSLVYGQMNEPPGARAR 290
Query: 363 APYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSR 539
+G + E+FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 291 VCLTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGS 350
Query: 540 LLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 719
+ ER GS+T++ I A D++ P + D L + I PA
Sbjct: 351 MQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPA 406
Query: 720 INVGLSVSRV 749
++ S SR+
Sbjct: 407 VDPLDSTSRI 416
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 55.6 bits (128), Expect = 4e-08
Identities = 53/249 (21%), Positives = 108/249 (43%), Gaps = 12/249 (4%)
Frame = +3
Query: 33 IIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDE 212
+ +++ P+ G + +D+L P +G I G GKT ++ Q +K +
Sbjct: 206 VTEKLAANNPLLCGQRVLDALFPCVQGGTTAIPGAFGCGKTVIS-------QSLSKYSNS 258
Query: 213 KKKLYCIYVAIGQKRSTVAQIVKRLTD---------AGAINYTIIVSATASDAAPLQYLA 365
IYV G++ + ++++++ + + T +V+ T++ + +
Sbjct: 259 DA---IIYVGCGERGNEMSEVLRDFPELTMEVEGVTTSIMKRTALVANTSNMPVAAREAS 315
Query: 366 PYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 545
Y+G + E+FRD G + ++ D S+ A A R++S L P YP + +
Sbjct: 316 IYTGITLAEYFRDMGLNVAMMADSTSRWAEALREISGRLGEMPADSGYPAYLAARLASFY 375
Query: 546 ERAAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRP 716
ERA + + GS+T + + GD + + + + I L+ +L + P
Sbjct: 376 ERAGRVKCLGSPEREGSVTIVGAVSPPGGDFADPVTSATLGIVQVFWGLDKKLAQRKHFP 435
Query: 717 AINVGLSVS 743
+IN +S S
Sbjct: 436 SINWLISYS 444
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 23 GARYHSPGVCA*AYADWYQGC*LSGTNWPWS 115
G R H VCA W QG S NW W+
Sbjct: 115 GPRNHPTFVCARTNGYWSQGRRFSCANWTWT 145
>AF016450-8|AAB65993.1| 578|Caenorhabditis elegans Hypothetical
protein B0238.7 protein.
Length = 578
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 351 LQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQM 470
+ Y Y C M + F+ NG+ L IYDD++K + Y+Q+
Sbjct: 526 MYYKIDYPTCEMSDNFQ-NGR--LRIYDDINKNSKKYQQI 562
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +2
Query: 251 EEVYCSSNCEEI--D*CWCHQLHNHRVCHRFRCCSPAIPGSLLWLCHG 388
E+ Y + + D W + H++C RFRC S + L L G
Sbjct: 706 EKAYADKKWQHVSEDLAWLSDIKIHQLCERFRCTSKFLLNEQLALKSG 753
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +2
Query: 251 EEVYCSSNCEEI--D*CWCHQLHNHRVCHRFRCCSPAIPGSLLWLCHG 388
E+ Y + + D W + H++C RFRC S + L L G
Sbjct: 706 EKAYADKKWQHVSEDLAWLSDIKIHQLCERFRCTSKFLLNEQLALKSG 753
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,708,008
Number of Sequences: 27780
Number of extensions: 379383
Number of successful extensions: 1051
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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