Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19c06
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 137 2e-33
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 95 1e-20
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 30 0.41
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 29 0.94
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 2.2
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 27 3.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 3.8
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 5.0
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 5.0
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 137 bits (331), Expect = 2e-33
Identities = 62/131 (47%), Positives = 89/131 (67%)
Frame = +1
Query: 310 IYSDKNSRXXXXXXXXXXSFAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVS 489
+ +DK SR S+ FV++ YG+WTNSLGLISDA HM FDC ++ GL A+ ++
Sbjct: 341 VLADKESRSIFYFFLLNVSYMFVQVIYGLWTNSLGLISDAIHMAFDCIAILVGLVATTLA 400
Query: 490 KWRSNERFSYGYARAEVLAGFVNGLFLLFIAFFIMSEAVERAIEPPEVKHERLLVVSVLG 669
K N + +G+A+ E L+GF NG+FL+ I+F I+ EA+ R PP++ ++LL+VS LG
Sbjct: 401 KMPLNYAYPFGFAKIEALSGFTNGIFLVLISFSIVGEALYRLFHPPQMNTDQLLLVSFLG 460
Query: 670 FLVNLVGIYAF 702
+VNLVGI AF
Sbjct: 461 LVVNLVGILAF 471
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 95.1 bits (226), Expect = 1e-20
Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
Frame = +1
Query: 364 SFAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNE-RFSYGYARAEV 540
+F F+E+ G +SL LI+D+FHM D L+ L A+ ++ S+E +++YG+ RAE+
Sbjct: 19 TFFFIEIITGYAIDSLALIADSFHMLNDIVSLLVALWATRLAHSTSHEPKYTYGWQRAEI 78
Query: 541 LAGFVNGLFLLFIAFFIMSEAVERAIEPPEVKHERLL-VVSVLGFLVNLVGIYAF 702
L NG+FL+ + FI EA+ER IEPP V + L+ V LG L N VGI+ F
Sbjct: 79 LGALSNGVFLIALCMFIFMEAIERFIEPPSVSNPTLMFFVGSLGLLSNFVGIFLF 133
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 29.9 bits (64), Expect = 0.41
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 493 WRSN-ERFSYGYARAEVLAGFVNGLFLLFIAFFIMSEAVERAIE 621
WR R+ +G + E+L F + L+F+ ++ E E AIE
Sbjct: 149 WRHTCLRYPFGMQQMELLVDFSFSILLIFLGMNLLKEPAEHAIE 192
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 28.7 bits (61), Expect = 0.94
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 261 TGRPCILLYKW*HSIFNTAYCLVTNLTSFHIDSFKNHKN*KIHTVYV 121
TG PC++ Y W S FN + + SF I F+N H +YV
Sbjct: 24 TGFPCLMYYLWACSKFNDSQFIKPE--SFTIAGFQNFFRTLGHYIYV 68
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 517 YGYARAEVLAGFVNGLFLLFIAFFIMS 597
Y Y + +L GF+ LFL+++ F I+S
Sbjct: 298 YPYLKLTLLVGFLFRLFLVYLLFLIIS 324
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 184 EVCDETIGSIEDTMLPLIQKDTRPSR--GPISG-IKEKFQN 297
EV DET+ +E + +Q +T+P+ G + G +KE+ +N
Sbjct: 271 EVIDETVNDLESAVSKGLQIETQPASHDGEVDGEVKEEEEN 311
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 644 RSCFTSGGSIALSTASLIMKNAINKRNNPLTNPASTS 534
R CF S SI TAS + + N N P+ + + +S
Sbjct: 160 RDCFPSSNSITTGTASPKLGSPFNHINRPVLDRSPSS 196
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 497 LHFDTSEAANPATRPVQSKNIWNASDIRP 411
+ FDT E T P+ SK + +SD++P
Sbjct: 346 IKFDTPEKKFTFTNPLSSKKLPASSDVKP 374
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 675 REPGGHIRVPPRSWTRPWSLPRR 743
R+P +R PR W R LP R
Sbjct: 214 RDPSDRVREEPREWVRRGPLPPR 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,725
Number of Sequences: 5004
Number of extensions: 59843
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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