Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19c06
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0707 - 20212190-20214592 111 6e-25
05_01_0214 - 1615519-1616775 62 5e-10
02_05_1345 + 35825552-35825834,35825914-35826022,35826098-358261... 59 4e-09
12_01_0042 + 337131-337612,338727-338898,338996-339204,339414-33... 31 0.98
11_01_0043 + 328272-328753,329233-329298,330082-330253,330357-33... 31 0.98
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 30 1.7
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 28 6.9
10_08_0423 + 17801221-17801416,17802239-17803212 28 9.2
>08_02_0707 - 20212190-20214592
Length = 800
Score = 111 bits (267), Expect = 6e-25
Identities = 55/142 (38%), Positives = 84/142 (59%)
Frame = +1
Query: 277 IKEKFQNWLRLIYSDKNSRXXXXXXXXXXSFAFVELFYGVWTNSLGLISDAFHMFFDCTG 456
+ E +R I +++ SR ++ FVE G ++SLGLISDA HM FDC
Sbjct: 343 VYEAIMGPVRHILNERKSRKIAAFLLINTAYMFVEFTSGFMSDSLGLISDACHMLFDCAA 402
Query: 457 LVAGLAASLVSKWRSNERFSYGYARAEVLAGFVNGLFLLFIAFFIMSEAVERAIEPPEVK 636
L GL AS +++ +N ++YG R EVL+G+VN +FL+ + I+ E+ ER +EP E+
Sbjct: 403 LAIGLYASYIARLPANGLYNYGRGRFEVLSGYVNAVFLVLVGALIVLESFERILEPREIS 462
Query: 637 HERLLVVSVLGFLVNLVGIYAF 702
LL VS+ G +VN++G+ F
Sbjct: 463 TSSLLTVSIGGLVVNVIGLVFF 484
>05_01_0214 - 1615519-1616775
Length = 418
Score = 62.1 bits (144), Expect = 5e-10
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Frame = +1
Query: 367 FAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVLA 546
F VE+ G+ NSL +++DA H+ D L + + W + + SYG+ R E+L
Sbjct: 68 FMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPQQSYGFFRIEILG 127
Query: 547 GFVNGLFLLFIAFFIMSEAVERAI-EPPEVKHERLLVVSVLGFLVNLV 687
V+ + +A ++ EA+ R I E EV+ + VS G VN++
Sbjct: 128 ALVSIQLIWLLAGILVYEAIVRLINESGEVQGSLMFAVSAFGLFVNII 175
>02_05_1345 +
35825552-35825834,35825914-35826022,35826098-35826137,
35827481-35827522,35827605-35827694,35828400-35828470,
35829375-35829463,35829583-35829652,35829898-35830048,
35830146-35830235,35830549-35830647
Length = 377
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = +1
Query: 364 SFAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVL 543
+++ EL G+ T +GL+SDAFH+ F C L L A S+ + + ++YGY R EVL
Sbjct: 79 AYSATELAIGLLTARVGLVSDAFHLTFGCGILTFSLFAMAASRTKPDHLYTYGYKRLEVL 138
Query: 544 AGFVNGL 564
A F N L
Sbjct: 139 AAFTNAL 145
>12_01_0042 +
337131-337612,338727-338898,338996-339204,339414-339572,
339914-340262
Length = 456
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 362 KFSNKKRNKFLEFLSE*INRSQF*NFSLIPEMGPRDGRVSFCISGNIVS 216
KF K RNK L F+ + +NR+Q+ + + E DGR +G+++S
Sbjct: 166 KFLEKLRNKRLVFVGDSVNRNQWVSMVCMVEHFIPDGRKMRVYNGSLIS 214
>11_01_0043 +
328272-328753,329233-329298,330082-330253,330357-330565,
330779-330937,331279-331627
Length = 478
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 362 KFSNKKRNKFLEFLSE*INRSQF*NFSLIPEMGPRDGRVSFCISGNIVS 216
KF K RNK L F+ + +NR+Q+ + + E DGR +G+++S
Sbjct: 188 KFLEKLRNKRLVFVGDSVNRNQWVSMVCMVEHFIPDGRKMRVYNGSLIS 236
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/82 (28%), Positives = 35/82 (42%)
Frame = -1
Query: 605 TASLIMKNAINKRNNPLTNPASTSALA*P*ENLSLDLHFDTSEAANPATRPVQSKNIWNA 426
TAS I++ +R PL +P+S+S P LD + S + R W A
Sbjct: 195 TASAILRGPFGQREGPLDSPSSSSFSTSP----YLDQNISKSRKTSHGAR---ESLYWGA 247
Query: 425 SDIRPKLFVHTP*KSSTKANDK 360
+ + K+ P K +T DK
Sbjct: 248 RENKQKVKGSDPVKKTTHVGDK 269
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 674 RNPSTDTTSKRSCFTSGGSIALSTASLIMKNAINKRNNPLTNPASTSAL 528
RN STDT +KRS + + L A+ +R+ L++ AS S L
Sbjct: 429 RNKSTDTDAKRSLWQGAAARHLMAAARRDATPTTRRSGGLSSVASRSRL 477
>10_08_0423 + 17801221-17801416,17802239-17803212
Length = 389
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -1
Query: 695 YMPTRFTRNPSTDTTSKRSCFTSGGSIALSTASLIMKNAINKRNNPLTNPASTSAL 528
++ TR +P+T TS SGG+ AL TA I +N N + L A T+ L
Sbjct: 149 FLATRLGLHPNTVRTSLLFLGCSGGAAALRTAKDIAEN--NPGSRVLVVAAETTVL 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,766,734
Number of Sequences: 37544
Number of extensions: 371049
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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