Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19c06
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-3|CAD21657.2| 746|Caenorhabditis elegans Hypothetical ... 141 6e-34
U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 76 3e-14
U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 76 3e-14
AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical ... 59 3e-09
AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical ... 59 3e-09
Z68119-7|CAA92193.2| 360|Caenorhabditis elegans Hypothetical pr... 53 2e-07
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 34 0.094
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 34 0.094
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr... 29 4.7
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l... 28 8.2
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p... 28 8.2
>AL132876-3|CAD21657.2| 746|Caenorhabditis elegans Hypothetical
protein Y105E8A.3 protein.
Length = 746
Score = 141 bits (341), Expect = 6e-34
Identities = 63/133 (47%), Positives = 86/133 (64%)
Frame = +1
Query: 301 LRLIYSDKNSRXXXXXXXXXXSFAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAAS 480
L I + +SR F VE YG WTNSLGLISD FHM FDC+ LV GL AS
Sbjct: 392 LNEILMNNDSRRIFWFLCVNLGFCGVEFLYGFWTNSLGLISDGFHMLFDCSALVMGLVAS 451
Query: 481 LVSKWRSNERFSYGYARAEVLAGFVNGLFLLFIAFFIMSEAVERAIEPPEVKHERLLVVS 660
++++W F++G+ R E+L+GF+N LFL IA FI+ EA+ER +PP + +RLL V+
Sbjct: 452 VMARWPPTRHFTFGFGRVEILSGFINALFLCVIALFILIEALERLFDPPNINTDRLLFVA 511
Query: 661 VLGFLVNLVGIYA 699
+ G +VNL G+Y+
Sbjct: 512 ISGLIVNLFGMYS 524
>U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform b protein.
Length = 561
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = +1
Query: 367 FAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVLA 546
F +E GV +S+ +++D++HM D L+ ++ R + R YG+ RAE L
Sbjct: 123 FCALEFITGVVCSSIAMLADSYHMAADVMALIVAFTCIKIAT-RPSTRLGYGWVRAETLG 181
Query: 547 GFVNGLFLLFIAFFIMSEAVERAIEPPEVKHE-RLLVVSVLGFLVNLVGIY 696
GF NG+F+ + + EAV R I + H ++LV+ +G L+NL G++
Sbjct: 182 GFFNGIFMCTVCVLVFQEAVGRIINVHMITHPLQVLVIGFIGLLINLFGMF 232
>U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform a protein.
Length = 519
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = +1
Query: 367 FAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVLA 546
F +E GV +S+ +++D++HM D L+ ++ R + R YG+ RAE L
Sbjct: 81 FCALEFITGVVCSSIAMLADSYHMAADVMALIVAFTCIKIAT-RPSTRLGYGWVRAETLG 139
Query: 547 GFVNGLFLLFIAFFIMSEAVERAIEPPEVKHE-RLLVVSVLGFLVNLVGIY 696
GF NG+F+ + + EAV R I + H ++LV+ +G L+NL G++
Sbjct: 140 GFFNGIFMCTVCVLVFQEAVGRIINVHMITHPLQVLVIGFIGLLINLFGMF 190
>AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical
protein Y39E4A.2b protein.
Length = 410
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +1
Query: 367 FAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVLA 546
F E G W SL +++DA HM D + + A ++ +++R S+GY RAEVL
Sbjct: 115 FIAAEFVGGFWAQSLAIMTDAGHMLSDLLSFIISIFAIRCARLPASKRLSFGYERAEVLG 174
Query: 547 GFVNGLFLLFIAFFIMSEAVERAI-EPPEVKHERLLVVSVLGFLVNLV 687
+ + L + ++ A++R + EV + +L+ + +G L N+V
Sbjct: 175 ALTSVIILWVLTTVLVVVAIQRIVNNEHEVDADVMLITAGVGVLFNIV 222
>AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical
protein Y39E4A.2a protein.
Length = 391
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +1
Query: 367 FAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVLA 546
F E G W SL +++DA HM D + + A ++ +++R S+GY RAEVL
Sbjct: 96 FIAAEFVGGFWAQSLAIMTDAGHMLSDLLSFIISIFAIRCARLPASKRLSFGYERAEVLG 155
Query: 547 GFVNGLFLLFIAFFIMSEAVERAI-EPPEVKHERLLVVSVLGFLVNLV 687
+ + L + ++ A++R + EV + +L+ + +G L N+V
Sbjct: 156 ALTSVIILWVLTTVLVVVAIQRIVNNEHEVDADVMLITAGVGVLFNIV 203
>Z68119-7|CAA92193.2| 360|Caenorhabditis elegans Hypothetical
protein T18D3.3 protein.
Length = 360
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = +1
Query: 367 FAFVELFYGVWTNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVLA 546
F E+ GV SL +++DA H+ D ++ L + +++ +++ S+G+ RAEVL
Sbjct: 64 FMVCEVIGGVLAGSLAIVTDAAHLLTDFASVLISLFSLYIARRPPSQKMSFGFHRAEVLG 123
Query: 547 GFVNGLFLLFIAFFIMSEAVERAIEPP-EVKHERLLVVSVLGFLVNLV 687
F + + + ++ A+ R + EV+ + + + LG +VNLV
Sbjct: 124 AFFSVFLIWIVTGVLVVLAIMRIVSGDYEVEGGIMALTAALGVVVNLV 171
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 34.3 bits (75), Expect = 0.094
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +1
Query: 400 TNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVLAGFVNGLFLLFI 579
++S+ L+S + F A L + +++ + +FSYG AR VLA F +
Sbjct: 40 SHSIVLMSTLWITIFSFCSQFASLYSMSITE-KPTHKFSYGLARVPVLAVFSTTVLAQLF 98
Query: 580 AFFIMSEAVERAIEP 624
+ F+ E+ E + P
Sbjct: 99 SIFLSKESFEHLLSP 113
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 34.3 bits (75), Expect = 0.094
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +1
Query: 400 TNSLGLISDAFHMFFDCTGLVAGLAASLVSKWRSNERFSYGYARAEVLAGFVNGLFLLFI 579
++S+ L+S + F A L + +++ + +FSYG AR VLA F +
Sbjct: 58 SHSIVLMSTLWITIFSFCSQFASLYSMSITE-KPTHKFSYGLARVPVLAVFSTTVLAQLF 116
Query: 580 AFFIMSEAVERAIEP 624
+ F+ E+ E + P
Sbjct: 117 SIFLSKESFEHLLSP 131
>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
protein F56D5.9 protein.
Length = 1132
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 91 IVIIRISDLILFLKLMLIMYSLKFSGR 11
IV+I L+LF+ L++I+YS+ +GR
Sbjct: 732 IVLIIFGSLVLFIILLIILYSITPNGR 758
>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
lineage protein 49 protein.
Length = 1042
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 662 TDTTSKRSCFTSGGSIALSTASLIMKNAINKRN 564
T +TSK S FTS S ST S + INK+N
Sbjct: 839 TPSTSKASSFTSLSSTRPSTRSTSIIPTINKKN 871
>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
protein LIN-49 protein.
Length = 1042
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 662 TDTTSKRSCFTSGGSIALSTASLIMKNAINKRN 564
T +TSK S FTS S ST S + INK+N
Sbjct: 839 TPSTSKASSFTSLSSTRPSTRSTSIIPTINKKN 871
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,345
Number of Sequences: 27780
Number of extensions: 328225
Number of successful extensions: 1011
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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