Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19c05
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   7.0  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    25   9.3  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 663 CYIFSSMFEYRILSGRCYRC 604
           CY+FSS F Y+  S R Y C
Sbjct: 152 CYLFSSYFSYK--SSRQYTC 169


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -1

Query: 236 FEARQLTAIRLYNLSIISLKLIWIMLFKEQYLMGIDFYVIIIEIKIIRCTY 84
           F+   LT  R + L II + + W  +   +  +  D   + I++ +IR  Y
Sbjct: 258 FDIEVLTLARFFGLPIIEVPITWHEVGGSKMTLLKDSISMAIDLLVIRLNY 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,133
Number of Sequences: 5004
Number of extensions: 59248
Number of successful extensions: 145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)