Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19c05
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0049 - 20277234-20277251,20277670-20277795,20278085-202781...    29   4.2  
04_02_0011 - 8513471-8513673,8513815-8513869                           29   5.5  
09_04_0350 + 16899076-16900164                                         28   9.6  

>03_05_0049 -
           20277234-20277251,20277670-20277795,20278085-20278153,
           20278233-20278280,20278413-20278494,20278583-20278662,
           20278764-20278835,20278912-20279006,20280396-20280477,
           20280604-20280963
          Length = 343

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 323 RLSLNLPPVVPAVGEAGTMAQSTLGYLHGSHPLPGTRSGLLAPPSV 460
           RL+++ P  VP    A  MA +  GY      LPG+  GL A  S+
Sbjct: 35  RLNVHAPEFVPRSPAASPMAAAAAGYYSPFLQLPGSSIGLGADWSI 80


>04_02_0011 - 8513471-8513673,8513815-8513869
          Length = 85

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 439 APCTTIGSTCLDCTTKQVCTKVGGIQRACLDPT-LPYCNLGECSATP 576
           AP T +   C+D T K +C+     +  C     L YCN   C+ +P
Sbjct: 33  APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNF--CANSP 77


>09_04_0350 + 16899076-16900164
          Length = 362

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/41 (51%), Positives = 22/41 (53%)
 Frame = -3

Query: 447 ARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDS 325
           AR P  V  SG + WR  R D A   AS TAG  GGR R S
Sbjct: 71  ARRPWLV-SSGAEAWRR-RGDAASA-ASATAGGAGGRSRRS 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,657,860
Number of Sequences: 37544
Number of extensions: 386670
Number of successful extensions: 1077
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)