Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19c02
         (444 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK098038-1|BAC05219.1|  183|Homo sapiens protein ( Homo sapiens ...    29   7.2  
AK023904-1|BAB14719.1|  229|Homo sapiens protein ( Homo sapiens ...    29   7.2  
AB111888-1|BAC98376.1| 1322|Homo sapiens KIAA2036 protein protein.     29   7.2  
AF521671-1|AAN03447.1| 2165|Homo sapiens SWI/SNF chromatin remod...    29   9.6  

>AK098038-1|BAC05219.1|  183|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40719 fis, clone THYMU2028379. ).
          Length = 183

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 242 ASTTDGGARSPLRVPGSGCDPWRYPRVDCAIVP 144
           A T    ARSPLR P + C P R  R+  A+ P
Sbjct: 24  AGTPTRPARSPLRSPRTACLPARVARLGMAMKP 56


>AK023904-1|BAB14719.1|  229|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13842 fis, clone THYRO1000793. ).
          Length = 229

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 224 GARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDSRSYC 87
           G ++PL+   +   P + PR+D A V ASP       + RDS  YC
Sbjct: 108 GEKTPLKTTATPLSPLKPPRMDTAPVVASPY------QRRDSDRYC 147


>AB111888-1|BAC98376.1| 1322|Homo sapiens KIAA2036 protein protein.
          Length = 1322

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -1

Query: 243 GKYYRW--W--CKEPTAGTRERMRSMEVSKG*LRHCSSLPNRRHHRWQVEGQPK 94
           G++  W  W  C EP  GT  R R     +   R C++LP   H   Q +  P+
Sbjct: 759 GEWSTWSPWSVCSEPCRGTMTRQRQCHSPQNGGRTCAALPGGLHSTRQTKPCPQ 812


>AF521671-1|AAN03447.1| 2165|Homo sapiens SWI/SNF chromatin
           remodeling complex subunit OSA2 protein.
          Length = 2165

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 227 GGARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGR 111
           G  + P+ VPG G  P   P  +     A+P +G  GGR
Sbjct: 138 GTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGR 176


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,410,531
Number of Sequences: 237096
Number of extensions: 1187312
Number of successful extensions: 2707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2707
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)